Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g027930.2 Solanum lycopersicum HOM05D000431 ORTHO05D016417 2.1e-25 118.2 60 100.0
Sopen11g012270 Solanum pennellii HOM05D000431 ORTHO05D016417 4.7e-17 90.5 53 86.8
Solyc02g090390.4 Solanum lycopersicum HOM05D000431 ORTHO05D000364 8.1e-17 89.7 53 84.9
Sopen02g035090 Solanum pennellii HOM05D000431 ORTHO05D000364 8.1e-17 89.7 53 84.9
CAN.G836.53 Capsicum annuum HOM05D000431 ORTHO05D000364 1.8e-16 88.6 53 83.0
Nitab4.5_0002157g0030 Nicotiana tabacum HOM05D000431 ORTHO05D000364 1.8e-16 88.6 53 83.0
Nitab4.5_0007024g0030 Nicotiana tabacum HOM05D000431 ORTHO05D000364 1.8e-16 88.6 53 83.0
SalBow1G5282 Salvia bowleyana HOM05D000431 ORTHO05D000364 9.8e-15 82.8 53 73.6
Migut.H00468 Erythranthe guttata HOM05D000431 ORTHO05D000364 1.3e-14 82.4 53 71.7
MSTRG.23779 Avicennia marina HOM05D000431 ORTHO05D000364 8.3e-14 79.7 53 69.8
MSTRG.15399 Avicennia marina HOM05D000431 ORTHO05D000364 4.1e-13 77.4 53 66.0
Peaxi162Scf00993g00343 Petunia axillaris HOM05D000431 ORTHO05D000364 4.1e-13 77.4 52 75.0
Oeu004881.1 Olea europaea HOM05D000431 ORTHO05D000364 9.2e-13 76.3 53 67.9
Dinv29951 Davidia involucrata HOM05D000431 ORTHO05D000364 1.6e-12 75.5 53 69.8
Lj4C138T20 Lonicera japonica HOM05D000431 ORTHO05D000364 1.6e-12 75.5 53 71.7
SalBow1G4071 Salvia bowleyana HOM05D000431 ORTHO05D000364 2.1e-12 75.1 54 72.2
HanXRQChr15g0489471 Helianthus annuus HOM05D000431 ORTHO05D000364 4.6e-12 73.9 55 72.7
Oeu050748.1 Olea europaea HOM05D000431 ORTHO05D000364 4.6e-12 73.9 53 66.0
Hma1.2p1_0873F.1_g231230 Hydrangea macrophylla HOM05D000431 ORTHO05D000364 6.0e-12 73.6 53 67.9
Rhsim08G0104300 Rhododendron simsii HOM05D000431 ORTHO05D000364 1.3e-11 72.4 53 69.8
Nitab4.5_0000382g0050 Nicotiana tabacum HOM05D000431 ORTHO05D000364 1.7e-11 72.0 53 64.2
MSTRG.2906 Avicennia marina HOM05D000431 ORTHO05D000364 2.3e-11 71.6 52 65.4
DCAR_025703 Daucus carota HOM05D000431 ORTHO05D016417 1.5e-10 68.9 54 72.2
vmacro17919 Vaccinium macrocarpon HOM05D000431 ORTHO05D000364 1.5e-10 68.9 55 65.5
TAR625G0599 Trochodendron aralioides HOM05D000431 ORTHO05D000364 3.3e-10 67.8 60 58.3
FAN23G0060 Fragaria x ananassa HOM05D000431 ORTHO05D000364 5.6e-10 67.0 59 57.6
FvH4_1g15440 Fragaria vesca HOM05D000431 ORTHO05D000364 7.3e-10 66.6 60 56.7
FAN19G0568 Fragaria x ananassa HOM05D000431 ORTHO05D000364 7.3e-10 66.6 60 56.7
FAN28G1799 Fragaria x ananassa HOM05D000431 ORTHO05D000364 7.3e-10 66.6 60 56.7
Lalb_Chr16g0378201 Lupinus albus HOM05D000431 ORTHO05D000364 7.3e-10 66.6 58 60.3
Lalb_Chr16g0378391 Lupinus albus HOM05D000431 ORTHO05D000364 7.3e-10 66.6 58 60.3
Manes.13G128400 Manihot esculenta HOM05D000431 ORTHO05D000364 7.3e-10 66.6 60 58.3
RcHm_v2.0_Chr2g0104671 Rosa chinensis HOM05D000431 ORTHO05D000364 7.3e-10 66.6 60 56.7
Actinidia12067 Actinidia chinensis HOM05D000431 ORTHO05D000364 9.5e-10 66.2 58 65.5
arahy.Tifrunner.gnm1.ann1.GW8KD6 Arachis hypogaea HOM05D000431 ORTHO05D000364 1.2e-09 65.9 61 55.7
arahy.Tifrunner.gnm1.ann1.JFE5DU Arachis hypogaea HOM05D000431 ORTHO05D000364 2.1e-09 65.1 60 56.7
arahy.Tifrunner.gnm1.ann1.XA421G Arachis hypogaea HOM05D000431 ORTHO05D000364 2.1e-09 65.1 60 56.7
Manes.12G094000 Manihot esculenta HOM05D000431 ORTHO05D000364 2.1e-09 65.1 60 56.7
FAN26G0970 Fragaria x ananassa HOM05D000431 ORTHO05D000364 2.8e-09 64.7 59 54.2
Glyma.11G058800 Glycine max HOM05D000431 ORTHO05D000364 2.8e-09 64.7 59 57.6
PSO675G6333 Papaver somniferum HOM05D000431 ORTHO05D000364 2.8e-09 64.7 60 58.3
TPR.G19024 Trifolium pratense HOM05D000431 ORTHO05D000364 2.8e-09 64.7 59 57.6
TAR376G0737 Trochodendron aralioides HOM05D000431 ORTHO05D000364 2.8e-09 64.7 60 58.3
Potri.005G134400 Populus trichocarpa HOM05D000431 ORTHO05D000364 3.6e-09 64.3 60 53.3
QL06p042779 Quercus lobata HOM05D000431 ORTHO05D000364 3.6e-09 64.3 59 54.2
TWI09G0956 Tripterygium wilfordii HOM05D000431 ORTHO05D000364 4.7e-09 63.9 56 55.4
Ca_24795_v3 Cicer arietinum L. HOM05D000431 ORTHO05D000364 6.2e-09 63.5 59 57.6
Dinv30828 Davidia involucrata HOM05D000431 ORTHO05D000364 6.2e-09 63.5 54 64.8
Glyma.01G183500 Glycine max HOM05D000431 ORTHO05D000364 6.2e-09 63.5 59 55.9
Lj2g0010394 Lotus japonicus HOM05D000431 ORTHO05D000364 1.1e-08 62.8 60 58.3
Lj4g0001891 Lotus japonicus HOM05D000431 ORTHO05D000364 1.1e-08 62.8 59 55.9
Medtr5g018050 Medicago truncatula HOM05D000431 ORTHO05D000364 1.1e-08 62.8 58 56.9
TPR.G11355 Trifolium pratense HOM05D000431 ORTHO05D000364 1.1e-08 62.8 59 54.2
Nn5g29349 Nelumbo nucifera HOM05D000431 ORTHO05D000364 1.4e-08 62.4 60 55.0
Lalb_Chr05g0226731 Lupinus albus HOM05D000431 ORTHO05D000364 1.8e-08 62.0 60 53.3
Manes.15G143700 Manihot esculenta HOM05D000431 ORTHO05D000364 1.8e-08 62.0 60 55.0
TWI73G0735 Tripterygium wilfordii HOM05D000431 ORTHO05D000364 1.8e-08 62.0 60 50.0
Potri.009G106900 Populus trichocarpa HOM05D000431 ORTHO05D000364 2.3e-08 61.6 60 55.0
Haze_15447 Corylus avellana HOM05D000431 ORTHO05D000364 3.1e-08 61.2 60 51.7
Gohir.A11G045700 Gossypium hirsutum HOM05D000431 ORTHO05D000364 3.1e-08 61.2 58 58.6
Gohir.D11G049200 Gossypium hirsutum HOM05D000431 ORTHO05D000364 3.1e-08 61.2 58 58.6
Gorai.007G053000 Gossypium raimondii HOM05D000431 ORTHO05D000364 3.1e-08 61.2 58 58.6
CDE04G1211 Ceratophyllum demersum HOM05D000431 ORTHO05D000364 4.0e-08 60.8 58 56.9
MD15G1279000 Malus domestica HOM05D000431 ORTHO05D000364 4.0e-08 60.8 60 53.3
CiPaw.02G010700 Carya illinoinensis HOM05D000431 ORTHO05D000364 5.2e-08 60.5 60 53.3
MBI16_g24704_MAGBIO Magnolia biondii HOM05D000431 ORTHO05D000364 5.2e-08 60.5 59 54.2
Os03g0610900 Oryza sativa ssp. japonica HOM05D000431 ORTHO05D000364 5.2e-08 60.5 60 51.7
CANSAT01G1409 Cannabis sativa HOM05D000431 ORTHO05D000364 6.8e-08 60.1 60 55.0
Cfa003973 Carpinus fangiana HOM05D000431 ORTHO05D000364 6.8e-08 60.1 60 51.7
HanXRQChr12g0378331 Helianthus annuus HOM05D000431 ORTHO05D000364 6.8e-08 60.1 61 59.0
MD02G1166500 Malus domestica HOM05D000431 ORTHO05D000364 6.8e-08 60.1 60 53.3
Medtr8g079560 Medicago truncatula HOM05D000431 ORTHO05D000364 6.8e-08 60.1 59 54.2
Psat2g164760 Pisum sativum HOM05D000431 ORTHO05D000364 6.8e-08 60.1 60 50.0
Prupe.7G138200 Prunus persica HOM05D000431 ORTHO05D000364 6.8e-08 60.1 60 53.3
Sabra05G0108200 Salix brachista HOM05D000431 ORTHO05D000364 6.8e-08 60.1 56 57.1
Cc07_g05710 Coffea canephora HOM05D000431 ORTHO05D000364 8.9e-08 59.7 60 55.0
Dinv39896 Davidia involucrata HOM05D000431 ORTHO05D000364 8.9e-08 59.7 53 62.3
Gohir.A01G005800 Gossypium hirsutum HOM05D000431 ORTHO05D000364 8.9e-08 59.7 60 53.3
Aa31LG1G15440 Aethionema arabicum HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
Aqoxy6G00893 Aquilegia oxysepala HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 53.3
AL8G44520 Arabidopsis lyrata HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
AT5G66880 Arabidopsis thaliana HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
BcaB02g09975 Brassica carinata HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
A07p17010 Brassica napus HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
BraA07t29428Z Brassica rapa HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
Carub.0008s2761 Capsella rubella HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
CARHR280790 Cardamine hirsuta HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
Thhalv10004469m.g Eutrema salsugineum HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
Thhalv10010481m.g Eutrema salsugineum HOM05D000431 ORTHO05D000364 1.2e-07 59.3 61 49.2
Glyma.17G178800 Glycine max HOM05D000431 ORTHO05D000364 1.2e-07 59.3 58 55.2
HanXRQChr05g0149501 Helianthus annuus HOM05D000431 ORTHO05D000012 1.2e-07 59.3 49 65.3
Sp2g29780 Schrenkiella parvula HOM05D000431 ORTHO05D000364 1.2e-07 59.3 60 51.7
Atru.chr3.427 Acer truncatum HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 51.7
AT3G50500 Arabidopsis thaliana HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
BcaC06g33092 Brassica carinata HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
BcaC06g33303 Brassica carinata HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
A03p47810 Brassica napus HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
C07p45770 Brassica napus HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
BolC7t45098H Brassica oleracea HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
BraA03t13891Z Brassica rapa HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
Carub.0005s1681 Capsella rubella HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
Gohir.A11G189500 Gossypium hirsutum HOM05D000431 ORTHO05D000364 1.5e-07 58.9 59 54.2
Gohir.D11G196200 Gossypium hirsutum HOM05D000431 ORTHO05D000364 1.5e-07 58.9 59 54.2
Gorai.007G210100 Gossypium raimondii HOM05D000431 ORTHO05D000364 1.5e-07 58.9 59 54.2
Nitab4.5_0003726g0050 Nicotiana tabacum HOM05D000431 ORTHO05D000364 1.5e-07 58.9 62 54.8
Sp5g11710 Schrenkiella parvula HOM05D000431 ORTHO05D000364 1.5e-07 58.9 60 50.0
Hund00316 Selenicereus undatus HOM05D000431 ORTHO05D000364 1.5e-07 58.9 59 55.9
ATR0767G193 Amborella trichopoda HOM05D000431 ORTHO05D000364 2.0e-07 58.5 62 51.6
Duzib187G1600 Durio zibethinus HOM05D000431 ORTHO05D000364 2.0e-07 58.5 59 54.2
Gohir.D01G005900 Gossypium hirsutum HOM05D000431 ORTHO05D000364 2.0e-07 58.5 60 53.3
Gorai.002G006900 Gossypium raimondii HOM05D000431 ORTHO05D000364 2.0e-07 58.5 60 53.3
Lsat_1_v5_gn_4_168581 Lactuca sativa HOM05D000431 ORTHO05D000364 2.0e-07 58.5 54 55.6
PSO170G1294 Papaver somniferum HOM05D000431 ORTHO05D000364 2.0e-07 58.5 58 56.9
PSO700G0355 Papaver somniferum HOM05D000431 ORTHO05D000364 2.0e-07 58.5 58 56.9
PGR142G3935 Punica granatum HOM05D000431 ORTHO05D000364 2.0e-07 58.5 61 54.1
Cfa005423 Carpinus fangiana HOM05D000431 ORTHO05D000364 2.6e-07 58.2 61 54.1
ECA246G3892 Erigeron canadensis HOM05D000431 ORTHO05D000364 2.6e-07 58.2 60 48.3
Glyma.05G081900 Glycine max HOM05D000431 ORTHO05D000364 2.6e-07 58.2 58 55.2
AL5G30640 Arabidopsis lyrata HOM05D000431 ORTHO05D000364 4.4e-07 57.4 60 48.3
BcaC06g34762 Brassica carinata HOM05D000431 ORTHO05D000364 4.4e-07 57.4 60 50.0
C07p24860 Brassica napus HOM05D000431 ORTHO05D000364 4.4e-07 57.4 60 50.0
BolC7t43014H Brassica oleracea HOM05D000431 ORTHO05D000364 4.4e-07 57.4 60 50.0
HanXRQChr14g0430721 Helianthus annuus HOM05D000431 ORTHO05D000364 4.4e-07 57.4 54 57.4
Phvul.002G021600 Phaseolus vulgaris HOM05D000431 ORTHO05D000364 4.4e-07 57.4 59 52.5
Ca_22202_v3 Cicer arietinum L. HOM05D000431 ORTHO05D000364 5.8e-07 57.0 59 50.8
Psat4g088400 Pisum sativum HOM05D000431 ORTHO05D000364 5.8e-07 57.0 59 50.8
Cpa.g.sc62.55 Carica papaya HOM05D000431 ORTHO05D000364 7.6e-07 56.6 61 50.8
ECA232G3591 Erigeron canadensis HOM05D000431 ORTHO05D000364 7.6e-07 56.6 54 55.6
Sabra04G0096300 Salix brachista HOM05D000431 ORTHO05D000364 7.6e-07 56.6 60 50.0
VMungo0251G1931 Vigna mungo HOM05D000431 ORTHO05D000364 7.6e-07 56.6 58 55.2
Atru.chr5.2827 Acer truncatum HOM05D000431 ORTHO05D000364 9.9e-07 56.2 61 57.4
A01p04440 Brassica napus HOM05D000431 ORTHO05D000364 9.9e-07 56.2 60 53.3
Haze_01880 Corylus avellana HOM05D000431 ORTHO05D000364 9.9e-07 56.2 61 54.1
Sc07g0000090 Simmondsia chinensis HOM05D000431 ORTHO05D000364 9.9e-07 56.2 60 56.7
Zm00001eb051510 Zea mays HOM05D000431 ORTHO05D000364 9.9e-07 56.2 60 50.0
Phvul.003G247000 Phaseolus vulgaris HOM05D000431 ORTHO05D000364 1.3e-06 55.8 58 53.4
CAN.G179.51 Capsicum annuum HOM05D000431 ORTHO05D000364 1.7e-06 55.5 62 50.0
CAN.G322.38 Capsicum annuum HOM05D000431 ORTHO05D000364 1.7e-06 55.5 62 53.2
Potri.004G145500 Populus trichocarpa HOM05D000431 ORTHO05D000364 1.7e-06 55.5 61 52.5
Solyc01g108280.3 Solanum lycopersicum HOM05D000431 ORTHO05D000364 1.7e-06 55.5 62 53.2
Sopen01g050500 Solanum pennellii HOM05D000431 ORTHO05D000364 1.7e-06 55.5 62 53.2
PGSC0003DMG400025895 Solanum tuberosum HOM05D000431 ORTHO05D000364 1.7e-06 55.5 62 53.2
GSVIVG01031806001 Vitis vinifera HOM05D000431 ORTHO05D000364 1.7e-06 55.5 61 52.5
Dinv23595 Davidia involucrata HOM05D000431 ORTHO05D000364 2.2e-06 55.1 61 54.1
Eucgr.I00977 Eucalyptus grandis HOM05D000431 ORTHO05D000364 2.2e-06 55.1 61 55.7
Eucgr.L01984 Eucalyptus grandis HOM05D000431 ORTHO05D016417 2.2e-06 55.1 61 55.7
Lsat_1_v5_gn_3_92480 Lactuca sativa HOM05D000431 ORTHO05D000364 2.2e-06 55.1 56 48.2
Sabra09G0081700 Salix brachista HOM05D000431 ORTHO05D000364 2.2e-06 55.1 60 48.3
TAR628G0230 Trochodendron aralioides HOM05D000431 ORTHO05D000472 2.2e-06 55.1 56 51.8
Actinidia12975 Actinidia chinensis HOM05D000431 ORTHO05D000364 2.9e-06 54.7 61 54.1
CiPaw.01G023500 Carya illinoinensis HOM05D000431 ORTHO05D000364 2.9e-06 54.7 64 48.4
HPP92_014042 Vanilla planifolia HOM05D000431 ORTHO05D000364 2.9e-06 54.7 62 48.4
Prupe.8G115900 Prunus persica HOM05D000431 ORTHO05D000364 3.7e-06 54.3 60 50.0
THA.LOC104807347 Tarenaya hassleriana HOM05D000431 ORTHO05D000364 3.7e-06 54.3 61 55.7
Ah.02g124090 Amaranthus hybridus HOM05D000431 ORTHO05D016417 4.9e-06 53.9 60 53.3
Hund16309 Selenicereus undatus HOM05D000431 ORTHO05D000364 4.9e-06 53.9 60 53.3
CANSAT25G3761 Cannabis sativa HOM05D000431 ORTHO05D000364 6.4e-06 53.5 61 54.1
MD10G1089100 Malus domestica HOM05D000431 ORTHO05D000364 6.4e-06 53.5 60 48.3
VMungo1215G3046 Vigna mungo HOM05D000431 ORTHO05D000364 6.4e-06 53.5 59 50.8
AUR62001966 Chenopodium quinoa HOM05D000431 ORTHO05D000364 8.4e-06 53.1 59 54.2
AUR62003840 Chenopodium quinoa HOM05D000431 ORTHO05D000364 8.4e-06 53.1 59 54.2


User provided reference genes

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