Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.6e-91 338.6 158 100.0
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.9e-73 279.3 147 89.1
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.5e-66 253.8 140 85.7
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 1.2e-64 250.0 147 83.0
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 1.2e-64 250.0 147 83.0
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 1.0e-63 246.9 148 82.4
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 1.0e-63 246.9 148 82.4
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 1.0e-63 246.9 148 82.4
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 1.0e-63 246.9 148 82.4
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 1.0e-63 246.9 148 82.4
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 1.0e-63 246.9 148 82.4
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-62 242.3 144 81.2
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-62 242.3 144 81.2
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-62 242.3 144 81.2
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-62 242.3 144 81.2
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-62 242.3 144 81.2
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-62 242.3 144 81.2
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-62 242.3 144 81.2
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-62 242.3 144 81.2
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-62 241.9 146 80.8
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 4.4e-62 241.5 148 79.7
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 4.4e-62 241.5 148 79.7
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 9.7e-62 240.4 146 80.1
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 1.3e-61 240.0 146 80.1
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 1.3e-61 240.0 146 80.1
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-61 240.0 147 81.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 2.2e-61 239.2 144 80.6
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.8e-61 238.8 144 81.2
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 3.7e-61 238.4 143 81.1
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-60 236.9 144 81.2
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.4e-60 236.5 147 78.9
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.4e-60 236.5 144 80.6
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 7.0e-60 234.2 144 79.2
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 7.0e-60 234.2 144 79.2
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 9.1e-60 233.8 142 79.6
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 9.1e-60 233.8 142 79.6
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 9.1e-60 233.8 144 79.2
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 138 81.2
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 138 81.2
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 138 81.2
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.6e-59 233.0 138 81.9
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-59 233.0 138 81.9
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.6e-59 233.0 138 81.9
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-59 233.0 138 81.9
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-59 233.0 138 81.9
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 4.5e-59 231.5 147 76.9
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 5.9e-59 231.1 138 80.4
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 7.7e-59 230.7 138 81.2
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 7.7e-59 230.7 138 81.2
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.9e-58 228.8 146 76.7
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.9e-58 228.8 146 76.7
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 3.8e-58 228.4 146 76.7
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 7.2e-57 224.2 138 79.7
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-56 223.4 116 87.9
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 6.1e-56 221.1 138 77.5
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 1.4e-55 219.9 142 78.9
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 6.7e-55 217.6 140 73.6
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 7.5e-54 214.2 144 72.9
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 7.5e-54 214.2 144 72.9
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.3e-53 213.4 111 88.3
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 2.0e-51 206.1 144 70.8
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.5e-51 204.9 144 71.5
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 5.5e-49 198.0 144 66.0
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 3.6e-48 195.3 135 74.1
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-48 195.3 138 71.7
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 4.7e-48 194.9 120 79.2
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 4.7e-48 194.9 100 91.0
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.4e-47 193.4 121 78.5
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 4.0e-47 191.8 120 78.3
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 4.0e-47 191.8 120 78.3
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 4.0e-47 191.8 120 78.3
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.0e-46 189.5 134 70.9
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 2.6e-46 189.1 130 72.3
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 9.8e-46 187.2 109 82.6
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.3e-45 184.5 140 66.4
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 8.3e-45 184.1 116 75.0
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-44 183.3 92 90.2
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 3.1e-44 182.2 94 88.3
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 5.4e-44 181.4 140 66.4
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.0e-42 177.2 117 73.5
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.0e-42 177.2 117 73.5
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.3e-42 176.8 92 88.0
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.3e-42 176.8 92 88.0
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.3e-42 176.8 92 88.0
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 2.2e-42 176.0 124 70.2
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.2e-42 176.0 124 70.2
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-41 172.9 87 92.0
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.5e-41 172.6 104 78.8
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 4.2e-41 171.8 86 93.0
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 4.2e-41 171.8 141 63.8
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 5.5e-41 171.4 90 86.7
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 9.5e-41 170.6 100 81.0
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-40 169.9 101 80.2
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 4.0e-39 165.2 99 79.8
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 4.4e-38 161.8 127 63.8
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 1.6e-35 153.3 82 85.4
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 1.7e-34 149.8 77 89.6
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-34 149.4 77 90.9
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 3.8e-34 148.7 74 90.5
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 5.6e-33 144.8 123 61.0
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 9.5e-33 144.1 102 70.6
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 3.6e-32 142.1 90 77.8
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 3.6e-32 142.1 86 79.1
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 3.6e-32 142.1 140 53.6
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.0e-32 141.0 72 90.3
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 1.8e-31 139.8 74 86.5
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 1.8e-31 139.8 74 86.5
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-31 139.4 74 86.5
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 2.3e-31 139.4 74 86.5
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 4.0e-31 138.7 72 88.9
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 4.0e-31 138.7 72 88.9
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-30 136.7 71 88.7
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.0e-30 136.3 93 72.0
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.3e-29 133.7 71 85.9
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 4.9e-29 131.7 89 64.0
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 6.4e-29 131.3 148 55.4
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.4e-29 131.3 75 81.3
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.4e-28 130.2 116 61.2
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.4e-28 129.4 76 78.9
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 9.2e-28 127.5 72 79.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.6e-27 126.7 63 92.1
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 1.1e-25 120.6 75 74.7
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 7.3e-25 117.9 71 78.9
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 5.2e-23 111.7 62 77.4
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.2e-22 110.5 56 85.7
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 1.2e-22 110.5 65 80.0
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 9.8e-22 107.5 108 55.6
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.3e-21 107.1 81 67.9
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.3e-21 107.1 72 70.8
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 6.4e-21 104.8 62 77.4
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.4e-20 103.6 52 92.3
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 2.0e-19 99.8 51 84.3
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 2.0e-19 99.8 49 93.9
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 6.0e-19 98.2 48 93.8
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 6.6e-18 94.7 48 89.6
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.1e-15 85.9 43 93.0
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 4.0e-15 85.5 53 81.1
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.7e-11 72.8 41 85.4
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-10 69.7 40 87.5
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 6.6e-10 68.2 34 94.1
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 8.6e-10 67.8 37 86.5
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 1.5e-09 67.0 31 93.5
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 1.5e-09 67.0 47 68.1
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 1.9e-09 66.6 34 91.2
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-09 65.9 33 93.9
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-09 65.9 33 93.9
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 2.8e-08 62.8 44 65.9
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 8.1e-08 61.2 52 61.5
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-07 60.8 33 87.9
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 3.1e-07 59.3 31 90.3
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 4.0e-07 58.9 111 31.5


User provided reference genes

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