Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g021180.2 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.7e-29 131.3 67 100.0
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 3.6e-26 120.9 65 95.4
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-26 120.9 65 95.4
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-26 120.9 65 95.4
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-26 120.9 65 95.4
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-26 120.9 65 95.4
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.0e-25 117.5 65 93.8
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 5.3e-25 117.1 66 89.4
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 6.9e-25 116.7 65 90.8
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 6.9e-25 116.7 65 90.8
Solyc05g047440.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 9.0e-25 116.3 65 92.3
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-24 115.2 65 90.8
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 7.6e-24 113.2 64 89.1
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.3e-23 112.5 64 89.1
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.2e-23 111.7 64 89.1
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.2e-23 111.7 64 89.1
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.2e-23 111.7 64 89.1
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.2e-23 111.7 64 89.1
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.2e-23 111.7 64 89.1
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.2e-23 111.7 64 89.1
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 4.9e-23 110.5 68 86.8
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 86.8
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10013927m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.4e-23 109.8 68 85.3
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 8.4e-23 109.8 67 88.1
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 1.4e-22 109.0 67 86.6
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.4e-22 108.2 68 85.3
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.4e-22 108.2 68 85.3
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 3.2e-22 107.8 68 85.3
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.2e-22 107.8 58 94.8
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 4.2e-22 107.5 67 86.6
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 4.2e-22 107.5 67 86.6
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 4.2e-22 107.5 67 86.6
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 7.1e-22 106.7 67 85.1
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 9.3e-22 106.3 65 81.5
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.2e-21 105.9 68 83.8
CANSAT78G0545 Cannabis sativa HOM05D001070 ORTHO05D002096 2.1e-21 105.1 68 82.4
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.1e-21 105.1 60 90.0
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 3.5e-21 104.4 67 83.6
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.6e-21 104.0 60 88.3
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 4.6e-21 104.0 65 76.9
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 6.0e-21 103.6 65 80.0
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 6.0e-21 103.6 65 80.0
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 6.0e-21 103.6 67 80.6
Manes.11G122808 Manihot esculenta HOM05D001070 ORTHO05D002096 7.9e-21 103.2 68 80.9
Oeu054714.1 Olea europaea HOM05D001070 ORTHO05D002096 1.3e-20 102.4 59 89.8
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-20 101.3 67 80.6
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 3.0e-20 101.3 67 80.6
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 3.0e-20 101.3 67 80.6
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.9e-20 100.9 54 94.4
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 5.1e-20 100.5 63 84.1
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 6.7e-20 100.1 56 92.9
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 9.6e-19 96.3 65 69.2
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 4.8e-18 94.0 52 92.3
Nn349s46479 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-17 92.4 54 87.0
BraSC59t46505Z Brassica rapa HOM05D001070 ORTHO05D002096 1.8e-17 92.0 55 83.6
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-17 92.0 64 73.4
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 1.8e-17 92.0 65 72.3
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.0e-17 90.9 67 73.1
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 4.0e-17 90.9 62 74.2
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.0e-17 90.9 52 90.4
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.9e-17 90.1 67 71.6
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 9.0e-17 89.7 52 88.5
HanXRQChr13g0416561 Helianthus annuus HOM05D001070 ORTHO05D002096 9.0e-17 89.7 65 75.4
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 9.0e-17 89.7 52 86.5
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 2.6e-16 88.2 65 64.6
C03p28320 Brassica napus HOM05D001070 ORTHO05D002096 4.5e-16 87.4 59 81.4
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.5e-16 87.4 65 70.8
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 7.6e-16 86.7 55 85.5
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 9.9e-16 86.3 50 88.0
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.9e-16 86.3 67 68.7
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 9.9e-16 86.3 55 85.5
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 9.9e-16 86.3 55 85.5
Lalb_Chr16g0388601 Lupinus albus HOM05D001070 ORTHO05D002096 9.9e-16 86.3 52 82.7
BolC2t10605H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-15 85.9 55 85.5
CSS0017227 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 1.3e-15 85.9 57 78.9
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 2.2e-15 85.1 55 83.6
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 2.2e-15 85.1 49 87.8
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 2.9e-15 84.7 52 80.8
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.9e-15 84.7 67 65.7
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.9e-15 84.7 55 83.6
arahy.Tifrunner.gnm1.ann1.0FQ6JR Arachis hypogaea HOM05D001070 ORTHO05D002096 6.4e-15 83.6 49 81.6
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 6.4e-15 83.6 49 87.8
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 8.4e-15 83.2 55 76.4
DCAR_011103 Daucus carota HOM05D001070 ORTHO05D002096 1.1e-14 82.8 55 85.5
Solyc11g039900.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-14 82.8 51 82.4
Oeu038907.1 Olea europaea HOM05D001070 ORTHO05D002096 1.4e-14 82.4 51 80.4
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 1.9e-14 82.0 61 73.8
Solyc01g017250.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.9e-14 82.0 47 87.2
Glyma.02G189000 Glycine max HOM05D001070 ORTHO05D002096 2.4e-14 81.6 57 71.9
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 3.2e-14 81.3 55 81.8
Oeu015126.1 Olea europaea HOM05D001070 ORTHO05D002096 4.2e-14 80.9 51 78.4
arahy.Tifrunner.gnm1.ann1.13XSJR Arachis hypogaea HOM05D001070 ORTHO05D002096 7.1e-14 80.1 49 79.6
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 52 80.8
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Hund29772 Selenicereus undatus HOM05D001070 ORTHO05D002096 7.1e-14 80.1 70 65.7
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-13 79.3 55 74.5
Gohir.D06G105240 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-13 79.3 65 64.6
Oeu012767.1 Olea europaea HOM05D001070 ORTHO05D002096 1.2e-13 79.3 58 74.1
Lsat_1_v5_gn_6_14501 Lactuca sativa HOM05D001070 ORTHO05D002096 1.6e-13 79.0 58 75.9
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 1.6e-13 79.0 52 76.9
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 1.6e-13 79.0 52 76.9
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 1.6e-13 79.0 55 76.4
ClCG04G001030 Citrullus lanatus HOM05D001070 ORTHO05D002096 2.7e-13 78.2 49 83.7
Glyma.01G114300 Glycine max HOM05D001070 ORTHO05D002096 3.5e-13 77.8 45 82.2
BolSC43t60809H Brassica oleracea HOM05D001070 ORTHO05D002096 4.6e-13 77.4 57 78.9
MELO3C008746.2 Cucumis melo HOM05D001070 ORTHO05D002096 6.0e-13 77.0 42 88.1
Gorai.013G183200 Gossypium raimondii HOM05D001070 ORTHO05D002096 6.0e-13 77.0 56 69.6
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 1.3e-12 75.9 71 59.2
Gohir.D13G161333 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.0e-12 74.7 51 72.5
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 3.0e-12 74.7 66 56.1
Gorai.011G154800 Gossypium raimondii HOM05D001070 ORTHO05D002096 3.9e-12 74.3 55 70.9
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-12 74.3 65 66.2
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 5.1e-12 73.9 55 76.4
Phvul.009G122100 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 1.5e-11 72.4 45 77.8
Gohir.D10G139001 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-11 71.2 55 69.1
Hund01218 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.3e-10 69.3 63 63.5
Hund28771 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.3e-10 69.3 63 63.5
Hund29267 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.3e-10 69.3 63 63.5
Hund29396 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.3e-10 69.3 63 63.5
CiPaw.12G052500 Carya illinoinensis HOM05D001070 ORTHO05D002096 2.8e-10 68.2 45 73.3
Nitab4.5_0001574g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.8e-10 68.2 42 78.6
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-09 66.2 47 72.3
Psat0s1160g0280 Pisum sativum HOM05D001070 ORTHO05D002096 1.4e-09 65.9 51 62.7
Hund22090 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.8e-09 65.5 47 74.5
PGSC0003DMG400010649 Solanum tuberosum HOM05D001070 ORTHO05D002096 5.3e-09 63.9 38 86.8
Nn5g27511 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.0e-09 63.2 42 78.6
Psat1g157760 Pisum sativum HOM05D001070 ORTHO05D002096 1.2e-08 62.8 58 53.4
Oeu046574.1 Olea europaea HOM05D001070 ORTHO05D002096 1.5e-08 62.4 39 82.1
Hund03953 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.4e-08 61.2 62 53.2
Gohir.A13G082266 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.8e-08 60.5 55 60.0
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.8e-08 60.5 69 53.6
Sc10g0007490 Simmondsia chinensis HOM05D001070 ORTHO05D002096 7.6e-08 60.1 48 68.8
MD10G1298900 Malus domestica HOM05D001070 ORTHO05D002096 2.2e-07 58.5 42 71.4
Oeu010689.1 Olea europaea HOM05D011856 ORTHO05D013014 1.4e-06 55.8 29 96.6
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 2.5e-06 55.1 34 85.3
arahy.Tifrunner.gnm1.ann1.XG10WT Arachis hypogaea HOM05D001070 ORTHO05D002096 3.2e-06 54.7 30 80.0
ClCG06G008920 Citrullus lanatus HOM05D000806 ORTHO05D002324 3.2e-06 54.7 33 84.8
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 5.5e-06 53.9 32 84.4


User provided reference genes

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