Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g021120.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.2e-34 147.9 78 100.0
Gohir.A10G100333 Gossypium hirsutum HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 92.2
HanXRQChr00c0214g0572641 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr15g0489701 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-31 136.3 77 93.5
CAN.G1298.16 Capsicum annuum HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
Gohir.A03G043250 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
HanXRQChr13g0413721 Helianthus annuus HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
HanXRQChr13g0413871 Helianthus annuus HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
RcHm_v2.0_CPg0501741 Rosa chinensis HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
RcHm_v2.0_CPg0502671 Rosa chinensis HOM05D000729 ORTHO05D001063 2.8e-30 134.8 77 92.2
RcHm_v2.0_Chr5g0051091 Rosa chinensis HOM05D000729 ORTHO05D001063 3.7e-30 134.4 77 90.9
Migut.F01470 Erythranthe guttata HOM05D000729 ORTHO05D001063 4.8e-30 134.0 77 92.2
CSS0034759 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 6.3e-30 133.7 77 90.9
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 6.3e-30 133.7 77 92.2
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 6.3e-30 133.7 77 92.2
Potri.013G139112 Populus trichocarpa HOM05D000729 ORTHO05D001063 6.3e-30 133.7 77 90.9
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BolC2t10586H Brassica oleracea HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BolSC29t60627H Brassica oleracea HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BolSC37t60784H Brassica oleracea HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
BraSC58t46449Z Brassica rapa HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 90.9
HanXRQChr09g0249681 Helianthus annuus HOM05D000729 ORTHO05D001063 8.3e-30 133.3 77 92.2
Gohir.A09G045500 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-29 132.9 77 90.9
HanXRQChr13g0413651 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-29 132.5 78 91.0
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 1.4e-29 132.5 77 90.9
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 1.4e-29 132.5 77 90.9
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 1.4e-29 132.5 77 90.9
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 1.4e-29 132.5 77 90.9
Hund27858 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-29 132.5 77 90.9
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 1.8e-29 132.1 77 89.6
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 2.4e-29 131.7 77 89.6
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 2.4e-29 131.7 77 89.6
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 2.4e-29 131.7 77 89.6
Solyc09g061460.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.4e-29 131.7 77 90.9
Hund07988 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund08790 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund22780 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund27635 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund27885 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund27951 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund28172 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund28540 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund28970 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund29048 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund29105 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund29118 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund29149 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
Hund29155 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.1e-29 131.3 77 89.6
CAN.G612.3 Capsicum annuum HOM05D000729 ORTHO05D001063 4.1e-29 131.0 77 89.6
Eucgr.I01854 Eucalyptus grandis HOM05D000729 ORTHO05D001063 4.1e-29 131.0 77 89.6
Nn029s41588 Nelumbo nucifera HOM05D000729 ORTHO05D001063 5.4e-29 130.6 77 89.6
Nn031s41603 Nelumbo nucifera HOM05D000729 ORTHO05D001063 5.4e-29 130.6 77 89.6
Nn206s45069 Nelumbo nucifera HOM05D000729 ORTHO05D001063 5.4e-29 130.6 77 89.6
Nn219s45284 Nelumbo nucifera HOM05D000729 ORTHO05D001063 5.4e-29 130.6 77 89.6
Nn233s45561 Nelumbo nucifera HOM05D000729 ORTHO05D001063 5.4e-29 130.6 77 89.6
Nn269s46005 Nelumbo nucifera HOM05D000729 ORTHO05D001063 5.4e-29 130.6 77 89.6
CAN.G1738.18 Capsicum annuum HOM05D000729 ORTHO05D001063 1.2e-28 129.4 77 87.0
Thhalv10011731m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 1.2e-28 129.4 77 88.3
Hund03965 Selenicereus undatus HOM05D000729 ORTHO05D001063 4.5e-28 127.5 77 87.0
Peaxi162Scf00014g00287 Petunia axillaris HOM05D000729 ORTHO05D001063 5.9e-28 127.1 72 93.1
CAN.G30.9 Capsicum annuum HOM05D000729 ORTHO05D001063 1.3e-27 125.9 77 87.0
Gohir.D01G134200 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-27 125.2 77 87.0
CAN.G398.11 Capsicum annuum HOM05D000729 ORTHO05D001063 5.0e-27 124.0 77 84.4
CAN.G1185.9 Capsicum annuum HOM05D000729 ORTHO05D001063 6.5e-27 123.6 77 84.4
CAN.G1167.12 Capsicum annuum HOM05D000729 ORTHO05D001063 1.1e-26 122.9 77 88.3
Nitab4.5_0004920g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.2e-26 121.3 72 88.9
Gohir.D01G101826 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.2e-26 120.2 71 90.1
arahy.Tifrunner.gnm1.ann1.B0WG4N Arachis hypogaea HOM05D000729 ORTHO05D001063 2.1e-25 118.6 71 88.7
Hund01554 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.1e-25 118.6 71 88.7
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 8.0e-25 116.7 71 87.3
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 1.8e-24 115.5 73 83.6
arahy.Tifrunner.gnm1.ann1.984MHU Arachis hypogaea HOM05D000729 ORTHO05D001063 4.0e-24 114.4 71 84.5
arahy.Tifrunner.gnm1.ann1.E8A372 Arachis hypogaea HOM05D000729 ORTHO05D001063 5.2e-24 114.0 71 84.5
Nitab4.5_0004929g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.2e-24 114.0 71 85.9
CiPaw.03G002000 Carya illinoinensis HOM05D000729 ORTHO05D001063 4.4e-23 110.9 66 90.9
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 5.7e-23 110.5 71 83.1
BolSC56t61238H Brassica oleracea HOM05D000729 ORTHO05D001063 9.8e-23 109.8 63 90.5
Gohir.A05G306433 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-22 108.6 59 93.2
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.8e-22 108.2 72 80.6
arahy.Tifrunner.gnm1.ann1.NY619X Arachis hypogaea HOM05D000729 ORTHO05D001063 8.3e-22 106.7 71 84.5
Gohir.A05G307266 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-21 106.3 59 91.5
Nitab4.5_0000684g0120 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.0e-21 103.6 72 80.6
HanXRQChr00c0379g0574301 Helianthus annuus HOM05D000729 ORTHO05D001063 9.1e-21 103.2 62 90.3
Sed0012918 Sechium edule HOM05D000729 ORTHO05D001063 9.1e-21 103.2 77 77.9
HanXRQChr00c0780g0577311 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
HanXRQChr16g0530791 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
SalBow6G4786 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.2e-20 102.8 59 93.2
HanXRQChr02g0059781 Helianthus annuus HOM05D000729 ORTHO05D001063 2.0e-20 102.1 62 88.7
Gohir.A04G039450 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.5e-20 101.3 59 91.5
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.5e-20 101.3 59 91.5
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.5e-20 101.3 59 91.5
Hund27921 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.0e-19 99.8 60 88.3
BraSC143t45669Z Brassica rapa HOM05D000729 ORTHO05D001063 2.3e-19 98.6 59 88.1
Nitab4.5_0006542g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-19 98.6 56 94.6
Phvul.003G089802 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.9e-19 98.2 59 89.8
Phvul.009G090272 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.9e-19 98.2 59 89.8
Nitab4.5_0000729g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.5e-18 95.9 77 72.7
CsaV3_UNG208970 Cucumis sativus L. HOM05D000729 ORTHO05D001063 2.5e-18 95.1 54 90.7
Nitab4.5_0012558g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 2.5e-18 95.1 56 91.1
CSS0018773 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 4.2e-18 94.4 62 80.6
Gohir.D02G152152 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.2e-18 94.4 58 87.9
Peaxi162Scf00005g04915 Petunia axillaris HOM05D000729 ORTHO05D001063 4.2e-18 94.4 59 88.1
Gohir.D08G147600 Gossypium hirsutum HOM05D000729 ORTHO05D001063 5.5e-18 94.0 59 81.4
Lalb_Chr07g0191631 Lupinus albus HOM05D000729 ORTHO05D001063 1.2e-17 92.8 59 84.7
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 1.6e-17 92.4 53 94.3
Gohir.A09G093100 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.8e-17 91.7 59 83.1
arahy.Tifrunner.gnm1.ann1.M13VEQ Arachis hypogaea HOM05D000729 ORTHO05D001063 6.1e-17 90.5 51 90.2
Hund23965 Selenicereus undatus HOM05D000729 ORTHO05D001063 6.1e-17 90.5 63 77.8
Lalb_Chr07g0191591 Lupinus albus HOM05D000729 ORTHO05D001063 8.0e-17 90.1 59 83.1
Solyc06g009580.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.8e-16 89.0 49 91.8
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.3e-16 88.6 57 80.7
Lalb_Chr25g0281801 Lupinus albus HOM05D000729 ORTHO05D001063 3.0e-16 88.2 60 80.0
Gohir.A06G098106 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.8e-16 87.0 59 81.4
Nitab4.5_0003957g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.5e-15 85.9 53 83.0
Nitab4.5_0007979g0050 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.4e-15 84.3 47 89.4
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 4.4e-15 84.3 77 63.6
MD01G1004600 Malus domestica HOM05D000729 ORTHO05D001063 7.5e-15 83.6 59 78.0
Psat5g286120 Pisum sativum HOM05D000729 ORTHO05D001063 7.5e-15 83.6 59 76.3
Solyc09g050070.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 9.8e-15 83.2 47 95.7
Sc20g0001970 Simmondsia chinensis HOM05D000680 ORTHO05D000738 1.6e-12 75.9 47 80.9
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 2.7e-12 75.1 43 93.0
MBI05_g23317_MAGBIO Magnolia biondii HOM05D000729 ORTHO05D001063 2.7e-12 75.1 43 93.0
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 3.5e-12 74.7 43 93.0
Nitab4.5_0004533g0060 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.0e-11 73.2 59 67.8
Os04g0309100 Oryza sativa ssp. japonica HOM05D000729 ORTHO05D001063 2.3e-11 72.0 54 77.8
Lsat_1_v5_gn_8_77240 Lactuca sativa HOM05D000729 ORTHO05D001063 6.6e-11 70.5 43 86.0
Medtr4g103280 Medicago truncatula HOM05D000729 ORTHO05D002596 1.1e-10 69.7 44 81.8
Nitab4.5_0012234g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-10 69.7 43 86.0
Hund03962 Selenicereus undatus HOM05D000729 ORTHO05D002596 1.5e-10 69.3 46 84.8
Solyc02g011890.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.5e-10 69.3 55 67.3
HanXRQChr00c0264g0572831 Helianthus annuus HOM05D000729 ORTHO05D001063 7.3e-10 67.0 38 94.7
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 7.3e-10 67.0 38 94.7
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 7.3e-10 67.0 38 94.7
HanXRQChr13g0399651 Helianthus annuus HOM05D000729 ORTHO05D001063 2.1e-09 65.5 38 92.1
HanXRQChr13g0413801 Helianthus annuus HOM05D000729 ORTHO05D001063 2.1e-09 65.5 38 92.1
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 2.3e-08 62.0 33 90.9
Cc00_g23030 Coffea canephora HOM05D000729 ORTHO05D001063 8.9e-08 60.1 39 79.5
Lsat_1_v5_gn_6_40860 Lactuca sativa HOM05D000729 ORTHO05D001063 2.6e-07 58.5 52 61.5
RcHm_v2.0_Chr2g0118391 Rosa chinensis HOM05D000729 ORTHO05D001063 9.8e-07 56.6 31 93.5
Gohir.A08G078001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.9e-06 55.1 31 90.3
Potri.008G207100 Populus trichocarpa HOM05D000729 ORTHO05D001063 2.9e-06 55.1 72 48.6
HanXRQChr08g0227771 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-06 54.7 31 90.3


User provided reference genes

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