Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g021100.2 Solanum lycopersicum HOM05D000729 ORTHO05D001063 7.0e-19 96.3 49 100.0
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 2.5e-16 87.8 47 91.5
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 9.5e-16 85.9 44 97.7
CSS0022079 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.6e-15 85.1 47 89.4
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.6e-15 85.1 47 89.4
arahy.Tifrunner.gnm1.ann1.084TER Arachis hypogaea HOM05D000729 ORTHO05D001063 2.1e-15 84.7 45 93.3
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 2.1e-15 84.7 45 93.3
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 2.1e-15 84.7 45 93.3
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 2.8e-15 84.3 47 89.4
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 2.8e-15 84.3 47 89.4
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 2.8e-15 84.3 47 89.4
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 2.8e-15 84.3 45 93.3
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 3.6e-15 84.0 47 89.4
Nitab4.5_0007738g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.6e-15 84.0 43 97.7
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.7e-15 83.6 43 95.3
EL10Ac4g08618 Beta vulgaris HOM05D000729 ORTHO05D001063 6.2e-15 83.2 44 93.2
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 8.0e-15 82.8 47 87.2
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 8.0e-15 82.8 47 87.2
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 8.0e-15 82.8 47 87.2
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 1.4e-14 82.0 42 97.6
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-14 82.0 43 95.3
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 1.4e-14 82.0 44 93.2
VMungo0643G0001 Vigna mungo HOM05D000729 ORTHO05D001063 1.4e-14 82.0 42 97.6
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
C09p24730 Brassica napus HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
BolSC35t60680H Brassica oleracea HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
BolSC45t60895H Brassica oleracea HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
BolSC49t61130H Brassica oleracea HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 95.3
Nitab4.5_0012558g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 93.0
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 2.3e-14 81.3 45 88.9
Nitab4.5_0014666g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-14 81.3 43 95.3
vmacro22398 Vaccinium macrocarpon HOM05D000729 ORTHO05D001063 2.3e-14 81.3 44 93.2
vmacro22423 Vaccinium macrocarpon HOM05D000729 ORTHO05D001063 2.3e-14 81.3 44 93.2
HanXRQChr00c0454g0574901 Helianthus annuus HOM05D000729 ORTHO05D001063 3.1e-14 80.9 44 90.9
Lsat_1_v5_gn_3_112740 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-14 80.9 46 87.0
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-14 80.9 46 87.0
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-14 80.9 46 87.0
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-14 80.9 46 87.0
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 5.2e-14 80.1 43 95.3
Lalb_Chr12g0206651 Lupinus albus HOM05D000729 ORTHO05D001063 1.5e-13 78.6 43 93.0
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 2.0e-13 78.2 43 93.0
Lsat_1_v5_gn_6_37880 Lactuca sativa HOM05D000729 ORTHO05D001063 2.0e-13 78.2 43 93.0
BolSC29t60517H Brassica oleracea HOM05D000729 ORTHO05D001063 3.4e-13 77.4 42 92.9
arahy.Tifrunner.gnm1.ann1.KE24QQ Arachis hypogaea HOM05D000729 ORTHO05D001063 4.4e-13 77.0 45 84.4
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 5.8e-13 76.6 39 97.4
BraSC59t46525Z Brassica rapa HOM05D000729 ORTHO05D001063 5.8e-13 76.6 41 92.7
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 5.8e-13 76.6 39 97.4
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 1.3e-12 75.5 41 90.2
Nitab4.5_0001305g0050 Nicotiana tabacum HOM05D000890 ORTHO05D000697 1.3e-12 75.5 43 88.4
Nitab4.5_0007104g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.7e-12 75.1 43 88.4
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 4.9e-12 73.6 42 88.1
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 3.2e-11 70.9 43 83.7
Oeu015132.1 Olea europaea HOM05D000729 ORTHO05D001063 5.4e-11 70.1 42 81.0
HanXRQChr00c0572g0576001 Helianthus annuus HOM05D000729 ORTHO05D001063 7.0e-11 69.7 37 94.6
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 7.0e-11 69.7 37 94.6
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.0e-10 68.2 36 94.4
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 2.0e-10 68.2 36 94.4
Nitab4.5_0001392g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.5e-10 67.4 44 77.3
HanXRQChr00c0496g0575221 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-09 65.9 43 81.4
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 1.7e-09 65.1 34 97.1
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.9e-09 63.9 33 97.0
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.9e-09 63.9 33 97.0
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.9e-09 63.9 33 97.0
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.9e-09 63.9 33 97.0
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 5.0e-09 63.5 34 94.1
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 1.9e-08 61.6 32 96.9
CSS0050494 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 3.3e-08 60.8 38 81.6
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 1.6e-07 58.5 33 90.9
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 1.1e-06 55.8 34 85.3
VMungo0942G0002 Vigna mungo HOM05D000729 ORTHO05D001063 1.4e-06 55.5 32 90.6
Nitab4.5_0000729g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.2e-06 53.5 32 81.2
Psat5g286120 Pisum sativum HOM05D000729 ORTHO05D001063 5.2e-06 53.5 30 90.0
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 6.8e-06 53.1 28 96.4
Nn031s41602 Nelumbo nucifera HOM05D000729 ORTHO05D001063 6.8e-06 53.1 28 96.4
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 8.9e-06 52.8 28 92.9
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 8.9e-06 52.8 28 92.9
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 8.9e-06 52.8 28 92.9
CsaV3_UNG208980 Cucumis sativus L. HOM05D000729 ORTHO05D001063 8.9e-06 52.8 28 92.9
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.9e-06 52.8 28 92.9
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.9e-06 52.8 28 92.9


User provided reference genes

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