Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020843.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.0e-68 262.3 131 100.0
Solyc08g016677.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.8e-52 207.6 129 79.8
Sopen08g007140 Solanum pennellii HOM05D000107 ORTHO05D000570 3.1e-45 185.3 181 57.5
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 2.3e-24 115.9 99 53.5
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 6.7e-24 114.4 98 52.0
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 6.7e-24 114.4 98 52.0
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 6.7e-24 114.4 98 52.0
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 6.7e-24 114.4 98 52.0
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 6.7e-24 114.4 98 52.0
Sopen03g010950 Solanum pennellii HOM05D008041 ORTHO05D000385 1.1e-23 113.6 98 51.0
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 4.3e-23 111.7 98 51.0
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.6e-23 111.3 98 50.0
Solyc10g061845.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.4e-23 110.9 99 51.5
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 7.4e-23 110.9 98 51.0
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.3e-22 110.2 98 50.0
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 1.6e-22 109.8 98 50.0
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 4.8e-22 108.2 98 50.0
Sopen02g004250 Solanum pennellii HOM05D000004 ORTHO05D000385 8.1e-22 107.5 95 50.5
Solyc07g020915.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 9.0e-21 104.0 88 61.4
Sopen01g007430 Solanum pennellii HOM05D008041 ORTHO05D000385 2.0e-20 102.8 99 48.5
Sopen11g019240 Solanum pennellii HOM05D008041 ORTHO05D000385 8.4e-19 97.4 107 45.8
AUR62019486 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.5e-15 85.9 103 36.9
DCAR_001516 Daucus carota HOM05D004615 ORTHO05D000385 4.3e-15 85.1 100 42.0
Solyc01g034040.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.3e-15 85.1 79 48.1
Solyc02g081085.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.3e-15 85.1 109 40.4
EL10Ac2g03160 Beta vulgaris HOM05D004615 ORTHO05D000385 1.3e-14 83.6 105 36.2
AUR62020782 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.3e-14 83.6 103 33.0
Sopen08g019920 Solanum pennellii HOM05D008041 ORTHO05D000385 2.1e-14 82.8 71 53.5
Solyc10g018713.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.8e-13 79.7 67 49.3
AUR62031856 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.1e-13 78.6 101 33.7
Psat5g236880 Pisum sativum HOM05D008859 ORTHO05D007166 4.1e-13 78.6 101 37.6
Psat7g204000 Pisum sativum HOM05D008859 ORTHO05D007166 4.1e-13 78.6 101 37.6
EL10Ac1g01684 Beta vulgaris HOM05D004615 ORTHO05D000385 5.3e-13 78.2 105 34.3
TPR.G13785 Trifolium pratense HOM05D004615 ORTHO05D000385 6.9e-13 77.8 113 35.4
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 9.0e-13 77.4 102 35.3
EL10Ac4g08049 Beta vulgaris HOM05D004615 ORTHO05D000385 9.0e-13 77.4 102 35.3
EL10Ac5g11185 Beta vulgaris HOM05D004615 ORTHO05D000385 9.0e-13 77.4 102 35.3
EL10As16g24148 Beta vulgaris HOM05D004615 ORTHO05D000385 9.0e-13 77.4 102 35.3
Sopen04g010730 Solanum pennellii HOM05D008041 ORTHO05D000385 1.2e-12 77.0 109 36.7
EL10Ac1g01142 Beta vulgaris HOM05D004615 ORTHO05D000385 3.4e-12 75.5 100 36.0
EL10Ac5g11855 Beta vulgaris HOM05D004615 ORTHO05D000385 3.4e-12 75.5 102 34.3
EL10Ac5g11873 Beta vulgaris HOM05D004615 ORTHO05D000385 3.4e-12 75.5 101 34.7
EL10Ac9g22640 Beta vulgaris HOM05D004615 ORTHO05D000385 3.4e-12 75.5 102 34.3
AUR62034983 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.4e-12 75.5 120 30.0
Solyc05g150139.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.5e-12 75.1 62 48.4
EL10Ac1g01843 Beta vulgaris HOM05D009343 ORTHO05D011970 1.0e-11 73.9 104 39.4
AUR62030190 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.7e-11 73.2 99 33.3
Hund15079 Selenicereus undatus HOM05D020107 ORTHO05D000385 1.7e-11 73.2 107 36.4
Sopen08g013620 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-11 73.2 70 50.0
Hund31150 Selenicereus undatus HOM05D004615 ORTHO05D000385 2.2e-11 72.8 101 37.6
EL10Ac6g14405 Beta vulgaris HOM05D004615 ORTHO05D000385 2.9e-11 72.4 105 30.5
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 2.9e-11 72.4 94 38.3
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 2.9e-11 72.4 94 38.3
EL10Ac2g02989 Beta vulgaris HOM05D004615 ORTHO05D000385 5.0e-11 71.6 104 30.8
EL10Ac7g17625 Beta vulgaris HOM05D004615 ORTHO05D000385 5.0e-11 71.6 104 30.8
AUR62042361 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.5e-11 71.2 90 35.6
EL10Ac7g17419 Beta vulgaris HOM05D004615 ORTHO05D000385 1.1e-10 70.5 97 33.0
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 1.9e-10 69.7 103 29.1
CAN.G637.27 Capsicum annuum HOM05D000229 ORTHO05D000385 4.2e-10 68.6 75 40.0
AUR62033658 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.2e-10 68.6 90 31.1
EL10Ac8g18984 Beta vulgaris HOM05D010065 ORTHO05D000385 7.2e-10 67.8 104 33.7
HanXRQChr04g0100871 Helianthus annuus HOM05D004615 ORTHO05D000385 7.2e-10 67.8 100 34.0
Lj1g0024910 Lotus japonicus HOM05D004615 ORTHO05D007166 7.2e-10 67.8 95 34.7
Medtr5g061300 Medicago truncatula HOM05D004615 ORTHO05D000385 7.2e-10 67.8 94 31.9
HanXRQChr02g0040071 Helianthus annuus HOM05D004615 ORTHO05D000385 1.2e-09 67.0 100 32.0
Lalb_Chr20g0115001 Lupinus albus HOM05D000107 ORTHO05D000062 1.2e-09 67.0 87 37.9
Sopen10g011660 Solanum pennellii HOM05D000014 ORTHO05D000016 1.6e-09 66.6 88 42.0
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 2.1e-09 66.2 68 41.2
AUR62012549 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.7e-09 65.9 100 29.0
Psat5g270240 Pisum sativum HOM05D008859 ORTHO05D007166 2.7e-09 65.9 76 36.8
EL10Ac6g14681 Beta vulgaris HOM05D010065 ORTHO05D000385 6.1e-09 64.7 92 37.0
DCAR_010153 Daucus carota HOM05D024847 ORTHO05D000385 6.1e-09 64.7 71 40.8
DCAR_031829 Daucus carota HOM05D024847 ORTHO05D000385 6.1e-09 64.7 71 42.3
Lj4g0021021 Lotus japonicus HOM05D004615 ORTHO05D000385 7.9e-09 64.3 105 35.2
Nitab4.5_0008635g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.9e-09 64.3 100 32.0
Psat3g193080 Pisum sativum HOM05D004615 ORTHO05D000385 7.9e-09 64.3 92 33.7
EL10Ac9g22619 Beta vulgaris HOM05D004615 ORTHO05D000385 1.0e-08 63.9 96 29.2
HanXRQChr09g0240121 Helianthus annuus HOM05D004615 ORTHO05D000385 1.0e-08 63.9 100 31.0
Hund13368 Selenicereus undatus HOM05D009682 ORTHO05D000385 1.0e-08 63.9 104 35.6
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.3e-08 63.5 97 34.0
EL10Ac3g06972 Beta vulgaris HOM05D010065 ORTHO05D000385 1.3e-08 63.5 92 35.9
Nitab4.5_0003520g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.3e-08 63.5 100 31.0
Phvul.L001738 Phaseolus vulgaris HOM05D008859 ORTHO05D007166 1.3e-08 63.5 106 31.1
AUR62041916 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.8e-08 63.2 111 30.6
Nitab4.5_0010582g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-08 63.2 99 31.3
Psat2g138520 Pisum sativum HOM05D009811 ORTHO05D007166 1.8e-08 63.2 94 34.0
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 1.8e-08 63.2 67 44.8
EL10Ac9g20807 Beta vulgaris HOM05D004615 ORTHO05D000385 2.3e-08 62.8 92 35.9
AUR62043404 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.3e-08 62.8 82 31.7
Nitab4.5_0001199g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.3e-08 62.8 100 31.0
AUR62031864 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.0e-08 62.4 90 33.3
AUR62040424 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.0e-08 62.4 82 31.7
DCAR_015813 Daucus carota HOM05D024847 ORTHO05D000385 3.0e-08 62.4 71 40.8
TPR.G7595 Trifolium pratense HOM05D008859 ORTHO05D007166 3.0e-08 62.4 95 30.5
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 3.9e-08 62.0 100 35.0
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 3.9e-08 62.0 101 30.7
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.9e-08 62.0 98 30.6
Nitab4.5_0003970g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.9e-08 62.0 104 31.7
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.9e-08 62.0 100 30.0
PGSC0003DMG400043070 Solanum tuberosum HOM05D030601 ORTHO05D000385 3.9e-08 62.0 67 44.8
AUR62015616 Chenopodium quinoa HOM05D004615 ORTHO05D000385 5.1e-08 61.6 82 31.7
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 5.1e-08 61.6 62 40.3
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 5.1e-08 61.6 62 40.3
Sc06g0003990 Simmondsia chinensis HOM05D004615 ORTHO05D000385 5.1e-08 61.6 68 41.2
PGSC0003DMG400046569 Solanum tuberosum HOM05D004615 ORTHO05D019313 5.1e-08 61.6 76 43.4
EL10Ac1g02164 Beta vulgaris HOM05D004615 ORTHO05D000385 6.7e-08 61.2 85 31.8
AUR62043459 Chenopodium quinoa HOM05D004615 ORTHO05D000385 8.7e-08 60.8 96 32.3
Nitab4.5_0000781g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.7e-08 60.8 100 30.0
DCAR_029772 Daucus carota HOM05D004615 ORTHO05D000385 1.1e-07 60.5 80 33.8
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 1.1e-07 60.5 99 32.3
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 1.1e-07 60.5 99 32.3
Solyc10g018790.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.5e-07 60.1 59 50.8
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 1.9e-07 59.7 88 37.5
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 1.9e-07 59.7 101 30.7
Nitab4.5_0000188g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.9e-07 59.7 100 31.0
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 2.5e-07 59.3 104 31.7
PGSC0003DMG400034515 Solanum tuberosum HOM05D008041 ORTHO05D000385 2.5e-07 59.3 70 47.1
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 3.3e-07 58.9 101 30.7
AUR62031351 Chenopodium quinoa HOM05D014060 ORTHO05D000385 5.7e-07 58.2 63 44.4
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 5.7e-07 58.2 105 28.6
Nitab4.5_0000804g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.7e-07 58.2 100 32.0
Nitab4.5_0007957g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.7e-07 58.2 100 30.0
Lj2g0009854 Lotus japonicus HOM05D008859 ORTHO05D007166 7.4e-07 57.8 95 29.5
Sc07g0004310 Simmondsia chinensis HOM05D010414 ORTHO05D000385 7.4e-07 57.8 77 37.7
PGSC0003DMG400046364 Solanum tuberosum HOM05D007930 ORTHO05D007166 7.4e-07 57.8 116 28.4
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.7e-07 57.4 102 31.4
Nitab4.5_0010441g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.7e-07 57.4 98 28.6
Nitab4.5_0016483g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.7e-07 57.4 99 29.3
Sc08g0005540 Simmondsia chinensis HOM05D004615 ORTHO05D000385 9.7e-07 57.4 103 33.0
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 1.3e-06 57.0 105 28.6
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 1.3e-06 57.0 105 28.6
Nitab4.5_0002394g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.3e-06 57.0 100 28.0
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.3e-06 57.0 98 28.6
Psat0s2928g0040 Pisum sativum HOM05D009811 ORTHO05D007166 1.3e-06 57.0 87 33.3
AUR62010806 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.6e-06 56.6 104 28.8
SGA_v2.0_scaffold279G46788 Striga asiatica HOM05D004615 ORTHO05D000385 1.6e-06 56.6 78 37.2
arahy.Tifrunner.gnm1.ann1.SC3PTI Arachis hypogaea HOM05D010482 ORTHO05D000385 2.2e-06 56.2 95 33.7
Sc20g0003820 Simmondsia chinensis HOM05D004615 ORTHO05D000385 2.2e-06 56.2 63 39.7
AUR62011687 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.8e-06 55.8 62 35.5
AUR62042260 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.8e-06 55.8 82 30.5
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 3.7e-06 55.5 101 32.7
Hund03726 Selenicereus undatus HOM05D004615 ORTHO05D000385 4.8e-06 55.1 72 40.3
Sopen04g011930 Solanum pennellii HOM05D007930 ORTHO05D007166 4.8e-06 55.1 94 27.7
SGA_v2.0_scaffold623G53232 Striga asiatica HOM05D004615 ORTHO05D000385 4.8e-06 55.1 75 34.7
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 6.3e-06 54.7 94 28.7
AUR62042512 Chenopodium quinoa HOM05D014060 ORTHO05D000385 6.3e-06 54.7 63 41.3
Psat7g230640 Pisum sativum HOM05D008859 ORTHO05D007166 6.3e-06 54.7 76 31.6
Hund18471 Selenicereus undatus HOM05D020107 ORTHO05D000385 6.3e-06 54.7 81 37.0
Sc19g0006190 Simmondsia chinensis HOM05D010414 ORTHO05D000385 6.3e-06 54.7 100 29.0
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 8.2e-06 54.3 112 32.1


User provided reference genes

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