Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 0.0e+00 1168.7 580 100.0
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 0.0e+00 1161.4 580 99.1
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 0.0e+00 1115.9 581 95.5
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 9.4e-288 993.0 589 87.3
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 6.3e-268 927.2 602 82.4
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.5e-256 889.4 548 84.3
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 6.9e-214 747.7 615 67.6
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.9e-211 739.6 593 69.6
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.2e-210 736.9 588 67.9
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.6e-210 736.5 518 74.1
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 7.9e-210 734.2 593 68.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.6e-207 726.5 608 64.1
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.4e-206 723.4 534 69.9
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.4e-206 722.6 512 74.0
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 4.0e-206 721.8 530 72.1
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 1.2e-205 720.3 561 69.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 3.4e-205 718.8 568 68.7
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.8e-205 718.0 601 66.7
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 9.9e-205 717.2 604 65.6
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.7e-204 716.5 610 64.6
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.1e-203 711.1 600 64.7
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.6e-202 709.9 617 64.2
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.5e-202 708.8 600 65.3
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 7.9e-202 707.6 604 64.9
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 5.1e-201 704.9 598 64.4
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 5.1e-201 704.9 567 66.5
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.7e-201 704.1 615 64.2
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.1e-200 703.7 514 71.4
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.3e-200 702.2 600 64.0
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.6e-199 699.9 590 64.6
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 8.2e-199 697.6 452 77.9
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.4e-198 696.8 501 74.1
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.8e-198 696.4 502 72.5
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.4e-198 696.0 607 63.6
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.4e-198 696.0 585 66.0
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 9.0e-198 694.1 598 64.5
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.5e-197 693.3 591 64.6
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.0e-197 693.0 509 70.1
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 2.0e-197 693.0 590 65.6
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.6e-197 692.6 583 65.2
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 4.5e-197 691.8 588 62.9
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.8e-197 691.4 608 63.8
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 7.6e-197 691.0 597 63.8
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 7.6e-197 691.0 589 64.7
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.3e-196 690.3 611 63.2
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-196 689.9 620 62.1
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 2.2e-196 689.5 451 76.9
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.2e-196 689.5 535 67.9
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 2.2e-196 689.5 595 63.2
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 4.9e-196 688.3 591 63.5
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.4e-196 687.6 417 81.3
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.1e-195 687.2 611 64.0
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.5e-195 686.0 601 64.1
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 4.2e-195 685.3 515 69.9
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 4.2e-195 685.3 547 66.5
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 5.5e-195 684.9 616 61.9
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 7.1e-195 684.5 592 63.5
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 9.3e-195 684.1 442 77.4
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.6e-194 683.3 556 66.7
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.6e-194 683.3 601 62.7
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.1e-194 682.9 609 63.1
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 2.7e-194 682.6 443 76.7
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 4.6e-194 681.8 457 74.4
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 3.9e-193 678.7 563 63.2
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.9e-193 678.7 595 62.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.1e-193 678.3 596 62.4
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.3e-192 675.2 512 68.9
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 4.3e-192 675.2 590 62.9
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 6.3e-191 671.4 586 63.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 6.3e-191 671.4 600 62.8
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.4e-190 670.2 590 63.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.4e-190 669.5 587 63.2
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 4.1e-190 668.7 606 62.0
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 5.3e-190 668.3 592 62.8
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 6.9e-190 667.9 609 62.6
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.0e-189 666.4 599 62.1
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 4.5e-189 665.2 606 62.0
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 5.9e-189 664.8 593 61.7
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 7.7e-189 664.5 594 61.4
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.0e-188 664.1 495 69.9
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.3e-188 663.7 408 79.7
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.3e-188 663.7 407 80.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.9e-188 662.5 594 62.1
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 6.5e-188 661.4 588 62.6
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 8.5e-188 661.0 571 63.7
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 8.5e-188 661.0 598 61.7
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.4e-187 660.2 507 69.2
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.9e-187 659.8 479 71.2
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 2.5e-187 659.4 412 78.4
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 5.5e-187 658.3 575 64.5
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.2e-187 657.9 487 70.0
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 9.4e-187 657.5 603 59.5
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 4.6e-186 655.2 529 66.4
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 6.1e-186 654.8 426 76.8
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.0e-185 654.1 496 67.5
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 5.1e-185 651.7 439 74.7
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 6.7e-185 651.4 589 62.0
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 6.7e-185 651.4 407 79.1
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.1e-184 650.6 593 61.0
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.5e-184 650.2 507 65.9
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 4.3e-184 648.7 408 78.2
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 4.1e-182 642.1 479 68.7
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 6.9e-182 641.3 585 61.2
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 3.4e-181 639.0 555 61.6
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.7e-180 636.7 414 76.6
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-179 634.0 501 66.7
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.9e-179 633.3 583 61.7
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.2e-179 632.5 495 66.1
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.5e-179 631.7 473 69.1
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 9.4e-179 630.9 597 59.3
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.6e-178 630.2 598 60.0
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.7e-178 629.4 585 60.2
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 4.7e-178 628.6 604 59.4
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.0e-177 627.5 498 66.7
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.0e-177 627.5 406 75.4
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.8e-177 626.7 595 59.8
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.8e-177 626.7 620 57.9
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 3.0e-177 625.9 497 67.0
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 3.9e-177 625.5 596 59.6
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-176 624.0 588 59.9
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 2.6e-176 622.9 594 59.6
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 2.6e-176 622.9 609 57.1
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 3.3e-176 622.5 542 63.1
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 9.7e-176 620.9 449 70.2
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 1.7e-175 620.2 575 59.0
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 2.2e-175 619.8 567 61.0
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 6.3e-175 618.2 579 59.8
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 2.4e-174 616.3 545 62.2
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 1.2e-173 614.0 575 59.7
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-173 612.8 467 69.0
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.6e-173 612.8 467 69.0
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 3.2e-171 605.9 498 64.5
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 3.2e-171 605.9 498 64.5
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 3.2e-171 605.9 498 64.5
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 8.5e-164 581.3 444 66.9
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 9.4e-163 577.8 361 79.2
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.4e-144 516.2 349 70.8
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.8e-143 513.1 426 62.2
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 8.3e-143 511.5 442 59.3
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 6.6e-140 501.9 436 59.2
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.1e-134 482.6 374 66.6
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 4.3e-131 472.6 365 63.8
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.8e-129 467.2 313 70.9
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 2.1e-98 364.0 209 80.4
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 3.4e-96 356.7 381 49.3
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.9e-93 345.5 394 55.6
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-92 344.7 197 80.7
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.8e-82 310.5 180 79.4
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 5.7e-75 286.2 247 60.7
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.3e-73 279.6 159 81.1
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.9e-73 279.3 156 82.7
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.9e-73 279.3 156 82.7
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.5e-70 270.8 474 38.6
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 5.9e-64 249.6 362 39.5
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.7e-58 230.3 191 67.0
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 5.0e-55 219.9 302 39.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.4e-49 201.1 157 69.4
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.2e-47 194.5 270 38.5
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 5.4e-41 173.3 109 75.2
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.0e-39 169.1 187 51.9
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.4e-35 154.1 110 65.5
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-31 142.1 147 53.1
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-30 138.7 88 72.7
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.5e-30 137.9 209 35.4
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 4.3e-30 137.1 231 43.7
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.6e-29 135.2 83 72.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.7e-29 133.7 127 55.1
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.8e-28 131.7 83 71.1
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 4.1e-25 120.6 101 65.3
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 4.3e-22 110.5 117 50.4
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 4.9e-18 97.1 100 56.0
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 2.3e-15 88.2 111 46.8
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 6.6e-15 86.7 94 54.3
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.5e-14 85.5 175 34.9
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 6.8e-12 76.6 48 72.9
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 3.2e-09 67.8 127 40.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 9.2e-09 66.2 66 59.1
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 6.6e-07 60.1 31 83.9


User provided reference genes

Program Settings