Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020340.1 Solanum lycopersicum HOM05D011121 ORTHO05D000001 4.0e-90 334.7 167 100.0
Sopen03g013960 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-19 99.0 128 43.8
Sopen08g006650 Solanum pennellii HOM05D000014 ORTHO05D000016 3.7e-19 99.0 128 43.0
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-13 79.7 112 36.6
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.0e-13 79.3 107 39.3
Sopen09g011010 Solanum pennellii HOM05D011121 ORTHO05D018873 1.5e-12 77.0 77 66.2
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.0e-12 76.6 103 37.9
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-11 73.6 100 37.0
Lj6A388G43 Lonicera japonica HOM05D000097 ORTHO05D000041 2.2e-11 73.2 96 38.5
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.8e-11 72.8 116 37.9
Nitab4.5_0003362g0070 Nicotiana tabacum HOM05D002833 ORTHO05D000001 6.3e-11 71.6 129 33.3
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 6.3e-11 71.6 102 40.2
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 8.2e-11 71.2 115 37.4
Dinv23993 Davidia involucrata HOM05D000097 ORTHO05D000041 1.1e-10 70.9 110 33.6
Lj6A385G50 Lonicera japonica HOM05D000097 ORTHO05D000041 1.1e-10 70.9 99 36.4
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-10 70.9 125 33.6
C09p34990 Brassica napus HOM05D000002 ORTHO05D000001 1.4e-10 70.5 108 33.3
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.4e-10 70.5 105 36.2
HanXRQChr09g0244201 Helianthus annuus HOM05D000097 ORTHO05D000041 1.8e-10 70.1 96 36.5
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 2.4e-10 69.7 108 39.8
COL.COLO4_13671 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.4e-10 69.7 99 36.4
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 2.4e-10 69.7 113 36.3
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 3.1e-10 69.3 106 34.9
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 3.1e-10 69.3 102 41.2
vmacro10274 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 3.1e-10 69.3 115 33.0
TAR192G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.3e-10 68.6 105 39.0
COL.COLO4_06456 Corchorus olitorius HOM05D000002 ORTHO05D000001 9.1e-10 67.8 110 33.6
Lj6A388G44 Lonicera japonica HOM05D000097 ORTHO05D000041 9.1e-10 67.8 82 39.0
MBI09_g18618_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D000001 9.1e-10 67.8 99 37.4
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 9.1e-10 67.8 105 32.4
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 1.6e-09 67.0 107 34.6
HanXRQChr16g0512561 Helianthus annuus HOM05D000097 ORTHO05D000041 2.0e-09 66.6 98 33.7
Oeu003487.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-09 66.6 92 34.8
Peaxi162Scf01254g00010 Petunia axillaris HOM05D015337 ORTHO05D019322 2.0e-09 66.6 121 33.9
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 2.0e-09 66.6 106 41.5
TAR696G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.0e-09 66.6 100 39.0
COL.COLO4_33694 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.7e-09 66.2 115 33.0
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 2.7e-09 66.2 98 34.7
Rhsim02G0101900 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.5e-09 65.9 98 36.7
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 4.5e-09 65.5 106 35.8
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 4.5e-09 65.5 104 33.7
Lj6A386G19 Lonicera japonica HOM05D014049 ORTHO05D000001 4.5e-09 65.5 99 35.4
Oeu021500.1 Olea europaea HOM05D000002 ORTHO05D000001 4.5e-09 65.5 92 34.8
MD02G1303700 Malus domestica HOM05D000002 ORTHO05D000001 5.9e-09 65.1 126 31.7
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 7.7e-09 64.7 102 34.3
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.7e-09 64.7 106 36.8
HanXRQChr02g0047401 Helianthus annuus HOM05D000097 ORTHO05D000041 1.0e-08 64.3 96 32.3
Oeu062632.1 Olea europaea HOM05D000002 ORTHO05D000001 1.0e-08 64.3 105 34.3
PSO423G0202 Papaver somniferum HOM05D000973 ORTHO05D000001 1.0e-08 64.3 108 34.3
Atru.chr7.1131 Acer truncatum HOM05D000002 ORTHO05D000001 1.3e-08 63.9 99 34.3
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 1.3e-08 63.9 141 33.3
Peaxi162Scf00226g00820 Petunia axillaris HOM05D000097 ORTHO05D000041 1.3e-08 63.9 123 30.9
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.9 121 31.4
CSS0027920 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-08 63.5 101 32.7
COL.COLO4_38403 Corchorus olitorius HOM05D000002 ORTHO05D000001 1.7e-08 63.5 95 37.9
Lsat_1_v5_gn_1_43320 Lactuca sativa HOM05D000097 ORTHO05D000041 1.7e-08 63.5 116 30.2
MD11G1197500 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-08 63.5 119 37.8
Nitab4.5_0007395g0030 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.7e-08 63.5 114 32.5
Peaxi162Scf00226g00936 Petunia axillaris HOM05D000097 ORTHO05D000041 1.7e-08 63.5 99 32.3
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-08 63.5 114 33.3
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-08 63.2 111 30.6
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.2e-08 63.2 99 34.3
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-08 63.2 105 36.2
Dinv13272 Davidia involucrata HOM05D000097 ORTHO05D000041 2.9e-08 62.8 96 33.3
Sabra01G0140600 Salix brachista HOM05D000002 ORTHO05D000001 2.9e-08 62.8 82 31.7
Oeu035908.1 Olea europaea HOM05D000002 ORTHO05D000001 3.8e-08 62.4 114 33.3
Dinv40326 Davidia involucrata HOM05D000097 ORTHO05D000041 5.0e-08 62.0 118 29.7
HanXRQChr11g0353571 Helianthus annuus HOM05D000097 ORTHO05D000041 5.0e-08 62.0 123 29.3
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 5.0e-08 62.0 124 33.9
PSO040G0055 Papaver somniferum HOM05D000973 ORTHO05D000001 5.0e-08 62.0 112 34.8
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.0e-08 62.0 103 31.1
Solyc05g041470.2 Solanum lycopersicum HOM05D000097 ORTHO05D013868 5.0e-08 62.0 121 32.2
GSVIVG01016108001 Vitis vinifera HOM05D000002 ORTHO05D000001 5.0e-08 62.0 82 32.9
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-08 61.6 105 36.2
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 6.5e-08 61.6 112 31.2
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 6.5e-08 61.6 106 34.0
RcHm_v2.0_Chr7g0203981 Rosa chinensis HOM05D000002 ORTHO05D000001 6.5e-08 61.6 106 33.0
Sabra01G0007200 Salix brachista HOM05D003064 ORTHO05D000001 6.5e-08 61.6 82 32.9
TAR175G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.5e-08 61.6 138 30.4
CSS0047136 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-08 61.2 104 30.8
Hma1.2p1_2656F.1_g326290 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 8.5e-08 61.2 102 31.4
HanXRQChr13g0394051 Helianthus annuus HOM05D000097 ORTHO05D000041 1.1e-07 60.8 133 30.8
Nitab4.5_0000871g0050 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.1e-07 60.8 108 31.5
PSO421G0367 Papaver somniferum HOM05D000002 ORTHO05D000001 1.1e-07 60.8 107 29.9
Prupe.4G199600 Prunus persica HOM05D000002 ORTHO05D000001 1.1e-07 60.8 82 35.4
Lsat_1_v5_gn_6_85720 Lactuca sativa HOM05D000097 ORTHO05D000041 1.5e-07 60.5 101 31.7
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-07 60.5 133 30.8
ECA238G4427 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.9e-07 60.1 117 33.3
HanXRQChr17g0553721 Helianthus annuus HOM05D000097 ORTHO05D000041 1.9e-07 60.1 108 33.3
Hma1.2p1_2243F.1_g317900 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.5e-07 59.7 102 30.4
Nitab4.5_0002205g0040 Nicotiana tabacum HOM05D000002 ORTHO05D000001 2.5e-07 59.7 82 32.9
PSO339G3884 Papaver somniferum HOM05D000002 ORTHO05D000001 2.5e-07 59.7 115 31.3
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-07 59.7 105 31.4
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 2.5e-07 59.7 106 31.1
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 3.2e-07 59.3 98 30.6
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.2e-07 59.3 140 33.6
vmacro10270 Vaccinium macrocarpon HOM05D000097 ORTHO05D013593 3.2e-07 59.3 84 35.7
Ciclev10013318m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.2e-07 58.9 111 32.4
COL.COLO4_28232 Corchorus olitorius HOM05D000002 ORTHO05D000001 4.2e-07 58.9 114 31.6
ECA248G1065 Erigeron canadensis HOM05D000097 ORTHO05D000041 4.2e-07 58.9 98 30.6
MD12G1254800 Malus domestica HOM05D002861 ORTHO05D003104 4.2e-07 58.9 107 31.8
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 4.2e-07 58.9 105 31.4
Sopen05g025510 Solanum pennellii HOM05D000006 ORTHO05D000001 4.2e-07 58.9 123 30.1
CSS0021297 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.5e-07 58.5 107 29.9
ECA233G0266 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.5e-07 58.5 104 30.8
HanXRQChr08g0213321 Helianthus annuus HOM05D000002 ORTHO05D000001 5.5e-07 58.5 78 35.9
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 5.5e-07 58.5 98 31.6
Oeu032551.1 Olea europaea HOM05D000002 ORTHO05D000001 5.5e-07 58.5 105 32.4
Peaxi162Scf00460g00045 Petunia axillaris HOM05D002833 ORTHO05D000001 5.5e-07 58.5 84 35.7
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 7.2e-07 58.2 82 34.1
FvH4_5g20624 Fragaria vesca HOM05D000002 ORTHO05D000001 7.2e-07 58.2 116 31.0
Prupe.2G074700 Prunus persica HOM05D000002 ORTHO05D000001 7.2e-07 58.2 80 36.2
Sabra16G0004600 Salix brachista HOM05D000002 ORTHO05D000001 7.2e-07 58.2 92 38.0
Actinidia07495 Actinidia chinensis HOM05D000002 ORTHO05D000001 9.4e-07 57.8 106 28.3
Nitab4.5_0000305g0090 Nicotiana tabacum HOM05D002833 ORTHO05D000001 9.4e-07 57.8 120 31.7
HanXRQChr01g0028891 Helianthus annuus HOM05D000097 ORTHO05D000041 1.2e-06 57.4 96 29.2
Nitab4.5_0004147g0060 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.2e-06 57.4 84 35.7
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-06 57.4 107 34.6
Atru.chr13.248 Acer truncatum HOM05D000002 ORTHO05D000001 2.1e-06 56.6 82 29.3
Atru.chr4.967 Acer truncatum HOM05D000002 ORTHO05D000001 2.1e-06 56.6 87 36.8
CSS0017162 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 56.6 117 29.9
Dinv09595 Davidia involucrata HOM05D000097 ORTHO05D000041 2.1e-06 56.6 125 28.0
PSO170G3169 Papaver somniferum HOM05D000002 ORTHO05D000001 2.1e-06 56.6 83 34.9
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.1e-06 56.6 110 35.5
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-06 56.6 106 31.1
Atru.chr1.1128 Acer truncatum HOM05D000002 ORTHO05D000001 2.7e-06 56.2 82 36.6
Atru.chr2.3010 Acer truncatum HOM05D000002 ORTHO05D000001 2.7e-06 56.2 82 29.3
COL.COLO4_36674 Corchorus olitorius HOM05D042556 ORTHO05D000001 2.7e-06 56.2 106 30.2
Nitab4.5_0000905g0060 Nicotiana tabacum HOM05D000002 ORTHO05D000001 2.7e-06 56.2 65 38.5
RcHm_v2.0_Chr1g0326351 Rosa chinensis HOM05D000067 ORTHO05D000097 2.7e-06 56.2 150 30.0
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 2.7e-06 56.2 130 28.5
Potri.012G087450 Populus trichocarpa HOM05D000002 ORTHO05D000001 3.6e-06 55.8 101 35.6
Sabra05G0021700 Salix brachista HOM05D000002 ORTHO05D000001 3.6e-06 55.8 105 33.3
CSS0031686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-06 55.5 103 30.1
FvH4_5g09403 Fragaria vesca HOM05D000002 ORTHO05D000001 4.7e-06 55.5 92 31.5
Lsat_1_v5_gn_8_128001 Lactuca sativa HOM05D000097 ORTHO05D000041 4.7e-06 55.5 80 32.5
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 4.7e-06 55.5 84 32.1
Nitab4.5_0003230g0060 Nicotiana tabacum HOM05D002833 ORTHO05D000001 4.7e-06 55.5 108 30.6
Peaxi162Scf00226g00923 Petunia axillaris HOM05D000097 ORTHO05D000041 4.7e-06 55.5 96 29.2
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 6.1e-06 55.1 84 32.1
CSS0021283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-06 55.1 93 32.3
HanXRQChr10g0282341 Helianthus annuus HOM05D000097 ORTHO05D000041 6.1e-06 55.1 102 28.4
Oeu040352.1 Olea europaea HOM05D001270 ORTHO05D001099 6.1e-06 55.1 103 26.2
Sabra19G0015700 Salix brachista HOM05D000002 ORTHO05D000001 6.1e-06 55.1 108 30.6
FvH4_5g09401 Fragaria vesca HOM05D000002 ORTHO05D000001 8.0e-06 54.7 113 28.3
HanXRQChr03g0078371 Helianthus annuus HOM05D000002 ORTHO05D000001 8.0e-06 54.7 119 32.8
Hma1.2p1_0001F.1_g001500 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.0e-06 54.7 78 37.2
Sopen01g005250 Solanum pennellii HOM05D000002 ORTHO05D000001 8.0e-06 54.7 117 29.1


User provided reference genes

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