Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 5.2e-230 800.8 444 100.0
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.1e-219 766.5 433 97.7
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.6e-194 681.4 469 82.5
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.9e-192 676.0 444 84.0
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.8e-190 669.5 440 81.8
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 2.0e-189 666.0 459 82.1
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 3.6e-146 522.3 450 64.9
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.4e-142 510.4 304 96.1
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 2.5e-139 499.6 449 63.3
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.0e-136 490.0 449 66.8
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.3e-135 487.3 455 62.2
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 6.4e-135 485.0 454 62.8
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 5.4e-134 481.9 453 64.0
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 9.2e-134 481.1 456 62.1
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 3.0e-132 476.1 456 61.6
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 6.4e-127 458.4 421 62.7
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 3.5e-125 452.6 445 59.1
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 5.1e-124 448.7 453 62.7
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.9e-123 446.8 393 69.2
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 4.3e-123 445.7 445 59.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 3.6e-122 442.6 419 60.4
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 4.7e-122 442.2 450 59.6
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 8.1e-122 441.4 452 63.1
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 1.8e-121 440.3 447 60.9
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 2.3e-121 439.9 419 59.9
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.1e-121 439.5 512 55.1
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 4.0e-121 439.1 378 66.4
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 8.9e-121 438.0 442 62.9
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.5e-120 437.2 449 60.8
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 5.8e-120 435.3 450 61.1
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 5.8e-120 435.3 421 61.5
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 7.5e-120 434.9 462 57.6
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.3e-119 434.1 447 62.2
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.2e-119 433.3 467 57.8
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 2.9e-119 433.0 456 61.0
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 8.3e-119 431.4 451 61.6
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.4e-118 430.6 441 59.0
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.9e-118 430.3 417 59.2
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 3.2e-118 429.5 373 65.1
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.7e-117 426.4 454 57.3
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 3.5e-117 426.0 458 58.3
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 3.9e-116 422.5 390 62.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 6.6e-116 421.8 377 64.5
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.9e-115 420.2 401 64.8
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 2.5e-115 419.9 462 56.7
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 2.5e-115 419.9 455 60.2
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 5.6e-115 418.7 453 60.9
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.2e-114 417.5 448 59.2
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 2.8e-114 416.4 452 58.8
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.6e-114 416.0 412 58.0
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 6.2e-114 415.2 451 55.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.1e-113 414.5 391 65.7
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 3.1e-113 412.9 444 54.7
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 3.1e-113 412.9 385 61.0
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 8.9e-113 411.4 463 56.6
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 2.6e-112 409.8 452 55.3
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 7.6e-112 408.3 447 54.4
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.1e-110 404.4 442 54.1
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.5e-109 399.4 383 58.2
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 4.6e-109 399.1 451 56.8
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.6e-109 399.1 467 52.7
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.5e-107 394.0 433 54.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.9e-107 393.7 395 60.3
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.5e-107 393.3 377 59.7
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 2.0e-104 383.6 428 54.7
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.4e-104 382.9 466 53.0
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 4.4e-104 382.5 430 54.7
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 4.2e-102 375.9 474 54.0
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 4.2e-102 375.9 474 54.0
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 9.3e-102 374.8 446 50.2
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.0e-101 372.1 320 69.1
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.3e-100 370.9 453 56.1
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.3e-100 370.9 454 50.0
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 5.1e-100 369.0 455 51.0
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.1e-99 367.9 325 68.3
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 2.5e-99 366.7 468 53.0
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.5e-99 366.7 397 56.4
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 7.3e-99 365.2 463 54.6
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 9.6e-99 364.8 465 51.2
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 1.6e-98 364.0 413 53.5
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 2.1e-98 363.6 457 52.7
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.8e-97 360.5 439 50.1
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.1e-94 351.3 471 53.1
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 7.1e-94 348.6 472 50.0
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.7e-93 346.7 339 62.5
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.6e-93 345.9 465 47.3
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 8.7e-92 341.7 444 50.0
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 3.3e-91 339.7 474 49.4
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.8e-90 336.7 457 53.4
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 3.7e-90 336.3 314 66.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 8.1e-90 335.1 457 53.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.1e-89 334.7 436 53.0
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.4e-89 334.3 376 52.4
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 5.3e-89 332.4 642 38.6
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.2e-88 331.3 412 55.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.5e-88 329.3 446 52.7
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.7e-87 327.4 391 52.9
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.9e-86 323.9 454 52.2
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.5e-86 323.6 391 52.7
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 2.1e-85 320.5 376 50.5
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 3.5e-85 319.7 452 52.0
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.9e-84 316.2 594 42.3
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.9e-84 316.2 594 42.3
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.1e-83 314.7 372 54.8
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 3.3e-83 313.2 369 52.3
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.6e-82 310.8 322 58.7
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.1e-81 308.1 378 50.5
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 3.1e-81 306.6 360 57.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 5.3e-81 305.8 463 49.9
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 4.5e-80 302.8 457 50.3
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.4e-78 297.7 336 55.4
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.9e-75 287.3 338 58.9
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.6e-74 284.3 311 53.7
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 8.5e-71 271.9 498 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 3.9e-68 263.1 389 50.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 1.1e-67 261.5 386 45.9
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.8e-66 256.9 200 64.5
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.1e-65 255.0 216 64.4
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 9.4e-62 241.9 368 43.8
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 2.8e-58 230.3 233 53.6
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 7.0e-57 225.7 291 48.5
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 3.5e-56 223.4 347 51.3
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.2e-53 214.9 446 37.4
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.7e-52 209.1 119 87.4
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.2e-47 194.1 315 44.4
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.9e-46 191.0 102 89.2
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 1.8e-41 174.5 403 40.7
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 3.4e-35 153.7 168 45.2
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.7e-34 150.2 309 40.8
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.4e-28 131.7 176 49.4
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-28 131.3 176 50.6
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 5.2e-28 129.8 67 94.0
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.8e-25 121.3 74 83.8
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 5.4e-25 119.8 221 39.8
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 3.5e-24 117.1 257 30.0
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 5.0e-23 113.2 69 85.5
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 1.1e-22 112.1 161 46.0
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.5e-22 111.7 64 81.2
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.5e-22 110.9 329 41.9
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 8.0e-21 105.9 209 40.7
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 8.6e-15 85.9 47 85.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.5e-14 84.3 51 74.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 4.4e-11 73.6 65 52.3
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.7e-08 64.3 138 26.8
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.7e-08 64.3 74 48.6
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 6.0e-08 63.2 52 63.5
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.1e-06 58.9 84 42.9
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 3.3e-06 57.4 51 52.9


User provided reference genes

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