Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g018740.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 1.7e-166 589.3 322 100.0
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 8.6e-158 560.5 318 96.2
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 2.8e-132 475.7 318 78.0
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 1.9e-104 383.3 318 64.5
Nitab4.5_0000167g0020 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.1e-101 374.0 258 75.2
Nitab4.5_0004158g0040 Nicotiana tabacum HOM05D004825 ORTHO05D005415 8.2e-100 367.9 265 72.8
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 4.5e-90 335.5 318 55.0
Oeu023621.1 Olea europaea HOM05D004825 ORTHO05D005415 1.0e-89 334.3 317 56.5
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 3.2e-88 329.3 318 53.8
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 1.2e-87 327.4 318 53.1
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 5.7e-85 318.5 315 52.4
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 3.7e-84 315.8 319 53.0
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 8.3e-84 314.7 318 50.6
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 1.4e-83 313.9 319 52.0
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 7.0e-83 311.6 318 51.3
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 8.5e-81 304.7 315 50.8
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 8.0e-79 298.1 318 48.7
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 2.3e-78 296.6 318 47.5
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 6.8e-78 295.0 318 50.9
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 6.8e-78 295.0 304 52.0
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 8.8e-78 294.7 318 48.4
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 8.8e-78 294.7 323 48.3
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 3.4e-77 292.7 318 47.8
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 4.4e-77 292.4 314 50.3
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 5.7e-77 292.0 320 48.8
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 7.5e-77 291.6 314 49.4
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 1.7e-76 290.4 315 47.9
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.2e-76 290.0 315 47.9
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.8e-76 289.7 318 47.5
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 2.8e-76 289.7 320 50.0
Solyc11g013080.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 6.3e-76 288.5 163 88.3
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 1.4e-75 287.3 318 49.1
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 3.1e-75 286.2 318 47.5
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 3.1e-75 286.2 318 47.5
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 4.1e-75 285.8 343 46.1
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 1.7e-73 280.4 315 48.9
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 3.8e-73 279.3 323 48.6
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 6.6e-73 278.5 318 48.7
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 7.3e-72 275.0 314 49.0
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 2.1e-71 273.5 301 49.2
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 2.8e-71 273.1 314 49.4
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 3.6e-71 272.7 320 45.9
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 6.1e-71 271.9 308 48.7
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 4.0e-70 269.2 318 46.5
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 6.8e-70 268.5 318 48.1
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 6.8e-70 268.5 318 46.5
Gohir.A09G053766 Gossypium hirsutum HOM05D004825 ORTHO05D005415 7.5e-69 265.0 296 47.6
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 7.5e-69 265.0 199 71.9
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 1.3e-68 264.2 272 51.8
Rhsim10G0138100 Rhododendron simsii HOM05D004825 ORTHO05D005415 2.9e-68 263.1 272 52.9
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 1.8e-67 260.4 323 45.2
QL02p047766 Quercus lobata HOM05D004825 ORTHO05D005415 2.4e-67 260.0 254 54.7
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 1.6e-66 257.3 318 43.1
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 2.7e-66 256.5 304 46.4
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 6.6e-65 251.9 299 46.5
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 3.3e-64 249.6 315 41.3
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 4.3e-64 249.2 292 46.9
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 5.6e-64 248.8 318 43.4
vmacro12851 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 5.6e-64 248.8 255 52.9
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 7.3e-64 248.4 320 41.9
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 4.7e-63 245.7 318 42.1
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 4.7e-63 245.7 318 42.1
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 6.2e-63 245.4 324 41.7
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 8.0e-63 245.0 318 40.9
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 1.0e-62 244.6 324 42.6
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 1.4e-62 244.2 318 41.8
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 1.4e-62 244.2 318 41.8
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.3e-62 243.4 318 41.5
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 4.0e-62 242.7 302 46.0
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 4.0e-62 242.7 302 46.0
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 4.0e-62 242.7 302 46.0
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 5.2e-62 242.3 318 41.2
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 5.2e-62 242.3 318 41.5
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 5.2e-62 242.3 318 41.5
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 5.2e-62 242.3 314 40.1
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 6.8e-62 241.9 308 44.8
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 2.0e-61 240.4 305 45.6
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 2.0e-61 240.4 318 41.2
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 3.4e-61 239.6 314 41.7
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 4.4e-61 239.2 322 41.3
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 4.4e-61 239.2 315 42.9
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 4.4e-61 239.2 318 40.9
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 7.5e-61 238.4 296 45.6
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 7.5e-61 238.4 300 45.7
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 1.3e-60 237.7 318 39.9
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 1.7e-60 237.3 301 45.8
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 2.2e-60 236.9 318 41.8
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.9e-60 236.5 300 45.0
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.9e-60 236.5 300 45.0
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 3.7e-60 236.1 317 41.0
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 6.4e-60 235.3 304 43.4
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 1.9e-59 233.8 302 44.7
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 3.2e-59 233.0 302 44.7
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 3.2e-59 233.0 263 48.3
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 7.0e-59 231.9 330 39.7
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 7.0e-59 231.9 288 45.5
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 2.7e-58 229.9 308 43.8
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 2.7e-58 229.9 316 38.3
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 6.6e-57 225.3 316 38.0
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 1.5e-56 224.2 302 40.1
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 3.3e-56 223.0 276 44.6
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 4.3e-56 222.6 298 43.6
ClCG11G007410 Citrullus lanatus HOM05D004825 ORTHO05D005415 7.3e-56 221.9 260 49.6
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.6e-55 220.7 296 42.9
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 2.0e-53 213.8 320 38.8
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 7.1e-51 205.3 286 40.2
COL.COLO4_07810 Corchorus olitorius HOM05D004825 ORTHO05D005415 2.1e-50 203.8 189 52.9
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 3.5e-50 203.0 304 41.4
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 3.5e-50 203.0 309 37.9
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 6.6e-49 198.7 303 38.0
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 7.3e-48 195.3 302 37.1
Sabra09G0094100 Salix brachista HOM05D004825 ORTHO05D005415 2.0e-45 187.2 237 45.6
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 2.8e-39 166.8 307 32.6
PGSC0003DMG400018032 Solanum tuberosum HOM05D004825 ORTHO05D005415 3.6e-39 166.4 90 87.8
CARHR056570 Cardamine hirsuta HOM05D004825 ORTHO05D005415 8.9e-38 161.8 174 47.7
PGSC0003DMG401000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 2.0e-37 160.6 87 88.5
PGSC0003DMG400014032 Solanum tuberosum HOM05D004825 ORTHO05D005415 3.4e-37 159.8 87 89.7
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 2.9e-36 156.8 303 35.0
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 1.6e-34 151.0 255 36.5
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 3.5e-34 149.8 259 35.1
Cpa.g.sc18.189 Carica papaya HOM05D004825 ORTHO05D005415 6.0e-34 149.1 199 46.2
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 1.6e-31 141.0 308 31.5
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 1.8e-30 137.5 230 40.4
Cpa.g.c33279 Carica papaya HOM05D004825 ORTHO05D005415 4.3e-24 116.3 89 58.4
AagrBONN_evm.TU.Sc2ySwM_340.165 Anthoceros agrestis HOM05D004825 ORTHO05D005415 2.1e-23 114.0 297 26.9
Nitab4.5_0000188g0370 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.2e-21 108.2 122 50.8
Mapoly0072s0017 Marchantia polymorpha HOM05D004825 ORTHO05D005415 4.5e-21 106.3 304 25.0
SGA_v2.0_scaffold71G24001 Striga asiatica HOM05D004825 ORTHO05D005415 2.1e-15 87.4 214 32.2
Pp3c8_14790 Physcomitrium patens HOM05D004825 ORTHO05D005415 1.6e-10 71.2 206 25.2
Glyma.09G252466 Glycine max HOM05D004825 ORTHO05D005415 1.1e-06 58.5 71 43.7


User provided reference genes

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