Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g018720.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 3.0e-142 508.4 252 100.0
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 8.3e-132 473.8 237 98.7
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 1.0e-97 360.5 238 78.6
Nitab4.5_0000167g0010 Nicotiana tabacum HOM05D004825 ORTHO05D005415 9.9e-93 344.0 252 71.8
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 5.1e-89 331.6 238 71.8
Nitab4.5_0004158g0060 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.2e-77 293.9 205 73.7
PGSC0003DMG402000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 4.5e-69 265.4 180 77.2
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 3.7e-63 245.7 229 59.0
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 4.1e-54 215.7 219 54.3
Solyc11g013060.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 2.7e-50 203.0 136 78.7
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 1.5e-48 197.2 221 48.4
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 3.4e-48 196.1 217 48.8
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 7.5e-48 194.9 204 52.0
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 2.8e-47 193.0 133 66.9
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 3.7e-47 192.6 219 52.1
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 3.7e-47 192.6 174 56.9
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 1.4e-46 190.7 228 49.1
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 2.4e-46 189.9 214 50.0
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 3.1e-46 189.5 159 57.2
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 7.0e-46 188.3 243 47.3
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 2.0e-45 186.8 175 52.6
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 2.7e-45 186.4 221 49.3
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 4.5e-45 185.7 196 52.0
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 1.0e-44 184.5 211 47.9
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 1.0e-44 184.5 127 66.1
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.9e-44 183.0 137 62.0
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 2.9e-44 183.0 137 62.0
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 3.8e-44 182.6 160 56.9
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.1e-43 181.0 208 46.6
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 1.1e-43 181.0 209 48.3
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 1.5e-43 180.6 137 61.3
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 1.9e-43 180.3 193 49.2
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 9.4e-43 177.9 179 50.3
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 1.6e-42 177.2 251 45.0
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 1.6e-42 177.2 182 49.5
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 3.6e-42 176.0 125 64.8
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 6.1e-42 175.3 213 48.4
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 8.0e-42 174.9 180 50.6
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 1.8e-41 173.7 133 60.9
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 2.3e-41 173.3 135 57.0
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 8.8e-41 171.4 205 45.4
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 8.8e-41 171.4 173 52.0
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 1.2e-40 171.0 235 43.4
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 2.0e-40 170.2 136 61.0
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 5.7e-40 168.7 212 47.6
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 5.7e-40 168.7 233 42.9
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 5.7e-40 168.7 188 47.3
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 2.2e-39 166.8 189 50.3
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.8e-39 166.4 126 59.5
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 8.3e-39 164.9 135 57.0
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 1.8e-38 163.7 204 45.1
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 2.4e-38 163.3 194 47.9
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 9.1e-38 161.4 207 46.9
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 9.1e-38 161.4 185 46.5
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 9.1e-38 161.4 170 48.8
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 1.2e-37 161.0 139 55.4
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 1.2e-37 161.0 220 45.0
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 4.5e-37 159.1 133 57.1
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 4.5e-37 159.1 133 57.1
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 4.5e-37 159.1 130 58.5
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 5.9e-37 158.7 143 53.1
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 5.9e-37 158.7 133 56.4
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 5.9e-37 158.7 170 46.5
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 1.0e-36 157.9 193 46.6
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 2.3e-36 156.8 170 45.3
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 2.9e-36 156.4 133 53.4
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 2.9e-36 156.4 133 53.4
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 8.6e-36 154.8 133 56.4
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 8.6e-36 154.8 133 55.6
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.9e-35 153.7 141 53.9
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 2.5e-35 153.3 133 54.9
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 3.3e-35 152.9 195 43.6
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 3.3e-35 152.9 149 50.3
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 4.2e-35 152.5 133 53.4
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 4.2e-35 152.5 196 42.9
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 7.2e-35 151.8 126 56.3
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 9.5e-35 151.4 178 48.9
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.2e-34 151.0 143 51.7
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 1.6e-34 150.6 248 39.9
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 1.6e-34 150.6 174 47.7
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 2.8e-34 149.8 124 58.1
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 6.1e-34 148.7 178 49.4
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.0e-33 147.9 191 46.6
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 1.4e-33 147.5 136 51.5
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 1.8e-33 147.1 129 56.6
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 2.3e-33 146.7 126 57.1
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 3.0e-33 146.4 126 57.1
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 3.0e-33 146.4 129 55.8
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 3.0e-33 146.4 129 55.8
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 3.0e-33 146.4 122 56.6
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 5.2e-33 145.6 129 55.8
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 6.8e-33 145.2 175 45.7
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 8.9e-33 144.8 136 54.4
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 8.9e-33 144.8 182 45.6
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 1.2e-32 144.4 121 47.1
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 9.8e-32 141.4 131 53.4
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 9.8e-32 141.4 131 53.4
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 3.7e-31 139.4 222 41.0
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 4.9e-31 139.0 126 54.0
Lj2A408T57 Lonicera japonica HOM05D004825 ORTHO05D005415 2.4e-30 136.7 172 45.3
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 9.2e-30 134.8 245 38.8
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 1.2e-29 134.4 236 37.3
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 1.0e-28 131.3 108 56.5
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 3.3e-27 126.3 122 47.5
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 4.3e-27 125.9 128 49.2
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 1.8e-25 120.6 246 34.1
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 2.9e-23 113.2 232 34.1
DCAR_026472 Daucus carota HOM05D004825 ORTHO05D005415 2.4e-22 110.2 90 56.7
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 3.2e-22 109.8 128 39.8
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 1.3e-20 104.4 170 38.2
Pp3c8_14790 Physcomitrium patens HOM05D004825 ORTHO05D005415 3.0e-20 103.2 122 41.8
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 6.6e-20 102.1 94 53.2
AagrBONN_evm.TU.Sc2ySwM_340.165 Anthoceros agrestis HOM05D004825 ORTHO05D005415 1.1e-19 101.3 129 41.9
Manes.09G172300 Manihot esculenta HOM05D004825 ORTHO05D005415 4.3e-19 99.4 112 52.7
Mapoly0072s0017 Marchantia polymorpha HOM05D004825 ORTHO05D005415 9.5e-19 98.2 142 36.6
Cpa.g.sc18.187 Carica papaya HOM05D004825 ORTHO05D005415 5.2e-17 92.4 131 44.3
BcaC03g14673 Brassica carinata HOM05D004825 ORTHO05D005415 9.2e-14 81.6 60 63.3
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 2.1e-13 80.5 73 49.3
Ca_07962_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 1.0e-12 78.2 125 42.4
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 1.7e-12 77.4 50 60.0
MBI11_g43072_MAGBIO Magnolia biondii HOM05D004825 ORTHO05D005415 5.6e-11 72.4 180 32.8
Os06g0171600 Oryza sativa ssp. japonica HOM05D004825 ORTHO05D005415 5.2e-09 65.9 54 55.6
Solyc08g008320.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 1.1e-06 58.2 124 31.5
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 4.1e-06 56.2 199 26.1
Medtr4g107330 Medicago truncatula HOM05D002290 ORTHO05D002532 7.1e-06 55.5 219 27.4


User provided reference genes

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