Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.0e-104 382.5 195 100.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.0e-89 332.0 180 93.3
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 8.8e-89 330.5 180 92.2
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.1e-83 313.5 180 87.8
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.7e-71 273.1 180 76.7
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.2e-71 272.7 173 79.2
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.4e-70 270.0 180 75.6
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.8e-57 226.5 184 61.4
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.0e-56 223.0 180 65.6
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.4e-56 222.2 120 92.5
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.1e-54 217.2 180 57.8
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.3e-52 210.3 171 60.2
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.9e-51 206.5 183 55.7
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.9e-51 206.5 180 58.9
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 4.3e-51 205.3 180 57.8
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 6.8e-49 198.0 180 56.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 3.4e-48 195.7 180 56.7
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 4.4e-48 195.3 183 55.2
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.8e-48 194.9 181 54.7
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 5.8e-48 194.9 175 60.0
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.5e-48 194.5 184 54.9
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 9.9e-48 194.1 173 56.6
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 9.9e-48 194.1 182 56.6
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.2e-47 193.0 185 55.1
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.2e-47 193.0 170 58.2
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.2e-47 193.0 180 55.6
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 8.3e-47 191.0 181 53.6
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.4e-46 190.3 185 55.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.4e-46 190.3 181 53.0
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 5.4e-46 188.3 161 58.4
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 7.1e-46 188.0 181 55.2
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.1e-46 188.0 181 55.2
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 9.2e-46 187.6 174 56.3
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 9.2e-46 187.6 179 57.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 6.0e-45 184.9 177 54.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.8e-45 184.5 181 54.1
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 7.8e-45 184.5 180 55.6
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-44 183.7 183 53.6
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-44 183.3 163 57.7
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.7e-44 183.3 184 53.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.3e-44 183.0 181 54.1
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 3.0e-44 182.6 191 55.5
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 6.6e-44 181.4 192 51.0
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.1e-43 180.6 180 52.8
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.1e-43 180.6 173 54.9
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 4.3e-43 178.7 183 54.6
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.2e-42 177.2 157 58.6
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.1e-42 176.4 186 52.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.8e-42 176.0 181 55.2
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 2.4e-41 172.9 186 51.6
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 2.4e-41 172.9 172 53.5
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.2e-41 171.8 181 52.5
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 6.8e-41 171.4 186 51.6
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 6.8e-41 171.4 179 52.0
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.2e-40 170.6 180 51.7
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.5e-40 170.2 180 51.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.6e-40 169.5 178 51.7
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 5.8e-40 168.3 181 51.9
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 7.6e-40 167.9 182 52.2
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 7.6e-40 167.9 180 52.2
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 9.9e-40 167.5 179 52.5
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.3e-39 167.2 186 50.0
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.7e-39 166.8 182 50.5
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.8e-39 165.6 181 49.2
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 8.4e-39 164.5 173 49.1
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.1e-38 164.1 187 49.2
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.2e-38 162.5 181 50.3
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 9.2e-38 161.0 177 53.7
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.6e-37 160.2 177 54.2
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 4.6e-37 158.7 181 48.6
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 7.8e-37 157.9 173 49.7
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 7.8e-37 157.9 173 49.7
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.3e-36 157.1 173 50.9
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.9e-36 155.6 173 50.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 5.1e-36 155.2 170 50.0
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 5.1e-36 155.2 170 50.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.1e-35 154.1 180 46.1
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 7.3e-35 151.4 180 48.3
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.1e-34 149.8 194 47.4
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.1e-33 147.5 105 65.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 5.2e-33 145.2 181 44.2
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.7e-31 140.2 174 44.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.7e-31 140.2 174 44.8
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.7e-31 140.2 175 49.1
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 2.2e-31 139.8 177 44.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.9e-31 138.7 177 44.1
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 8.4e-31 137.9 182 42.3
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.9e-30 136.7 180 43.3
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 7.8e-29 131.3 181 44.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 5.1e-28 128.6 175 44.0
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 3.1e-25 119.4 107 56.1
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 6.9e-25 118.2 185 41.1
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 3.4e-24 115.9 192 39.6
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 7.6e-24 114.8 171 43.3
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.8e-23 112.5 111 54.1
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.9e-22 110.2 185 39.5
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 7.1e-22 108.2 171 41.5
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 3.5e-21 105.9 175 41.1
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 7.9e-21 104.8 172 43.0
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.9e-20 102.4 50 98.0
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.5e-19 100.5 82 59.8
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 7.4e-19 98.2 178 36.5
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 6.2e-18 95.1 173 39.3
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.1e-17 94.4 170 42.4
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 3.1e-17 92.8 179 41.3
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.2e-16 90.9 73 56.2
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.2e-16 90.9 173 39.3
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.0e-16 90.1 136 41.9
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.4e-16 89.4 114 46.5
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 7.6e-16 88.2 177 34.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.9e-15 85.5 84 51.2
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 8.4e-15 84.7 181 34.8
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 9.3e-14 81.3 75 57.3
Solyc02g062813.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.0e-12 76.3 37 97.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-11 73.6 73 53.4
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 3.3e-11 72.8 72 50.0
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-08 64.3 103 35.9
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.2e-07 60.1 49 57.1
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.8e-07 59.3 222 28.8


User provided reference genes

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