Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.0e-75 285.0 137 100.0
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 6.6e-75 283.9 137 99.3
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.8e-72 275.8 137 96.4
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 9.0e-72 273.5 137 95.6
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 3.8e-70 268.1 137 93.4
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 1.2e-68 263.1 137 89.8
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.6e-68 262.7 135 90.4
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.6e-68 262.7 135 90.4
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 3.5e-68 261.5 135 91.1
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 6.0e-68 260.8 135 88.9
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 7.9e-68 260.4 135 88.9
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 88.9
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 88.1
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.8e-67 259.2 135 89.6
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 2.3e-67 258.8 135 87.4
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 88.9
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 88.9
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 3.9e-67 258.1 135 87.4
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 3.9e-67 258.1 135 87.4
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 3.9e-67 258.1 135 87.4
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 6.7e-67 257.3 135 87.4
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.7e-67 256.9 135 88.1
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.1e-66 256.5 135 86.7
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.1e-66 256.5 135 86.7
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.1e-66 256.5 135 86.7
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.5e-66 256.1 135 86.7
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 85.9
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 86.7
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 85.9
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 85.9
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 85.9
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 3.3e-66 255.0 135 85.9
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 135 85.9
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 5.6e-66 254.2 135 88.1
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 85.9
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 85.2
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 88.1
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 88.1
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 85.9
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 85.9
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 86.7
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 85.9
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 1.3e-65 253.1 135 87.4
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.6e-65 252.7 135 87.4
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.6e-65 252.7 135 85.9
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.1e-65 252.3 135 87.4
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.1e-65 252.3 137 86.1
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 2.8e-65 251.9 131 90.8
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.8e-65 251.9 133 86.5
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 85.2
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 85.9
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 85.9
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 85.9
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 85.9
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 85.9
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 4.8e-65 251.1 135 84.4
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 4.8e-65 251.1 135 84.4
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 4.8e-65 251.1 135 84.4
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 4.8e-65 251.1 135 84.4
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 4.8e-65 251.1 135 85.2
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 8.1e-65 250.4 135 83.0
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 8.1e-65 250.4 135 86.7
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 8.1e-65 250.4 135 86.7
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 83.7
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 83.7
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 84.4
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 83.7
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 85.2
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 83.7
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 1.8e-64 249.2 135 85.2
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 2.4e-64 248.8 135 84.4
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.4e-64 248.8 135 83.7
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 3.1e-64 248.4 135 83.7
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 4.0e-64 248.1 135 85.2
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 5.3e-64 247.7 135 83.7
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 5.3e-64 247.7 135 83.7
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 6.9e-64 247.3 135 83.7
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.2e-63 246.5 135 85.2
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 83.7
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 2.0e-63 245.7 135 83.7
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.0e-63 245.7 124 94.4
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 82.2
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 5.8e-63 244.2 135 83.0
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 7.6e-63 243.8 135 84.4
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 7.6e-63 243.8 135 82.2
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 1.3e-62 243.0 135 85.2
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.9e-62 241.9 135 85.2
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 3.8e-62 241.5 137 83.2
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 6.4e-62 240.7 119 95.0
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 7.1e-61 237.3 124 88.7
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 2.1e-60 235.7 131 84.0
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 2.3e-59 232.3 124 84.7
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 3.0e-59 231.9 124 87.1
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.1e-58 229.9 130 83.1
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.1e-58 229.9 129 82.2
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.9e-58 229.2 124 86.3
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.1e-57 225.7 135 77.8
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.8e-57 225.3 135 77.8
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 3.7e-57 224.9 136 78.7
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 4.8e-57 224.6 124 87.9
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.4e-56 223.0 138 74.6
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.9e-56 220.7 124 84.7
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 9.0e-56 220.3 136 77.2
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.2e-55 219.9 134 75.4
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 3.4e-55 218.4 137 73.7
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.7e-54 216.1 205 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.1e-53 213.4 137 69.3
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.2e-52 209.9 138 71.7
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.0e-51 206.8 120 80.0
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 5.1e-51 204.5 134 70.9
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 7.4e-50 200.7 121 79.3
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.0e-46 190.3 153 62.1
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.7e-46 189.5 138 63.0
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 3.8e-46 188.3 138 61.6
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 1.4e-43 179.9 128 64.1
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.2e-41 172.6 91 89.0
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 2.0e-39 166.0 125 68.0
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.2e-37 157.5 75 90.7
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 9.4e-37 157.1 76 89.5
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 2.7e-36 155.6 92 75.0
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 6.1e-36 154.5 131 60.3
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 8.8e-35 150.6 75 86.7
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.5e-34 149.8 74 86.5
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 1.5e-34 149.8 74 86.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 7.4e-34 147.5 74 83.8
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 7.4e-34 147.5 74 83.8
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.8e-33 145.6 74 85.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 8.5e-30 134.0 73 76.7
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 2.1e-28 129.4 74 87.8
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 8.0e-28 127.5 76 76.3
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 5.2e-27 124.8 140 53.6
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 4.8e-25 118.2 131 42.7
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 5.5e-21 104.8 117 47.9
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 4.1e-16 88.6 47 78.7
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.2e-15 87.0 127 38.6
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.6e-15 86.7 50 86.0
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.0e-15 86.3 165 38.2
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 8.5e-14 80.9 70 65.7
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 2.8e-09 65.9 35 77.1
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.7e-09 65.5 67 52.2
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 7.7e-07 57.8 141 30.5


User provided reference genes

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