Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 8.2e-160 567.0 287 100.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 6.4e-120 434.5 228 97.4
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.4e-119 433.3 228 97.4
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.8e-113 411.4 228 91.7
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.2e-112 409.5 228 90.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 9.5e-108 394.0 228 88.2
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.6e-107 392.1 228 87.3
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.7e-99 365.2 227 81.1
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 5.3e-98 361.7 227 78.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.5e-97 360.1 227 79.3
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.6e-97 359.4 227 78.0
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 4.4e-97 358.6 222 81.5
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 5.8e-97 358.2 228 78.1
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.7e-96 356.7 220 80.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.4e-96 354.8 227 78.0
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 8.4e-96 354.4 227 77.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.4e-95 353.6 228 77.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.2e-95 352.1 227 76.2
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.2e-95 352.1 227 77.5
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.2e-94 350.5 228 75.9
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.7e-94 349.4 226 76.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 4.6e-94 348.6 227 76.2
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 6.0e-94 348.2 227 76.2
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 7.8e-94 347.8 226 76.1
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 3.9e-93 345.5 229 74.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.9e-93 345.5 228 75.9
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 3.9e-93 345.5 227 74.4
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 5.1e-93 345.1 227 77.1
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.1e-93 345.1 226 74.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.6e-93 344.7 227 74.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 8.7e-93 344.4 232 73.7
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-92 343.2 227 76.2
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.5e-92 342.8 226 73.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 2.5e-92 342.8 227 75.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 3.3e-92 342.4 232 71.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.3e-92 342.4 227 74.9
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 3.3e-92 342.4 227 75.8
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 3.3e-92 342.4 224 75.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.6e-92 341.7 227 74.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 5.6e-92 341.7 225 74.7
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 9.6e-92 340.9 232 71.6
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.3e-91 340.5 228 75.0
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.3e-91 340.5 227 74.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.3e-91 340.5 232 74.1
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.3e-91 340.5 240 71.2
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 2.1e-91 339.7 227 73.6
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.8e-91 339.3 227 73.1
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.8e-91 339.3 224 76.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.8e-91 339.3 224 74.6
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.4e-90 337.0 228 72.8
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.4e-90 337.0 232 75.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.4e-90 337.0 226 74.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.4e-90 336.3 228 71.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 5.3e-90 335.1 225 74.2
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 5.3e-90 335.1 225 73.3
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 5.3e-90 335.1 227 74.0
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 6.9e-90 334.7 226 73.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 6.9e-90 334.7 227 73.6
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-89 334.0 227 73.6
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.5e-89 333.6 227 68.7
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.5e-89 333.6 225 73.8
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.0e-89 333.2 227 73.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.6e-89 332.8 224 72.8
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-89 331.3 227 72.7
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.6e-89 331.3 218 75.7
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.7e-88 330.1 227 68.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.2e-88 329.7 227 72.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.9e-88 329.3 226 73.9
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.9e-88 329.3 216 76.9
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 3.8e-88 328.9 227 72.2
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 4.9e-88 328.6 227 71.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.4e-88 328.2 227 71.8
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.4e-88 327.8 227 71.8
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 8.4e-88 327.8 227 72.7
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.9e-87 326.6 224 71.4
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.4e-87 326.2 258 64.7
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.2e-87 325.9 226 73.0
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 3.2e-87 325.9 227 71.8
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 3.2e-87 325.9 227 71.4
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 4.2e-87 325.5 222 73.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.2e-87 325.5 227 71.4
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 5.4e-87 325.1 232 70.3
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-87 325.1 227 72.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 9.3e-87 324.3 226 71.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.2e-86 323.9 227 71.8
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.6e-86 323.6 227 71.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.1e-86 323.2 227 70.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.1e-86 323.2 222 72.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.7e-86 322.8 224 71.4
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.7e-86 322.8 227 71.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.7e-86 322.8 227 71.4
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.5e-86 322.4 225 71.1
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 4.6e-86 322.0 227 70.9
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 6.0e-86 321.6 227 70.5
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 6.0e-86 321.6 227 70.5
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.0e-86 321.6 227 71.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 7.9e-86 321.2 227 70.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 7.9e-86 321.2 227 70.0
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.0e-85 320.9 227 70.5
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-85 320.5 227 71.8
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.3e-85 320.5 227 70.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.9e-85 318.9 227 68.7
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 3.9e-85 318.9 227 67.8
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 6.7e-85 318.2 225 71.1
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 8.7e-85 317.8 227 69.6
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 8.7e-85 317.8 227 70.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-84 317.4 226 70.4
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.9e-84 316.6 227 70.0
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.5e-84 316.2 222 71.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.3e-83 313.9 227 69.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-83 313.2 202 76.2
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 4.0e-82 308.9 227 68.3
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.4e-79 300.4 201 74.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 3.2e-79 299.3 227 63.0
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.2e-79 298.9 228 65.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.2e-79 298.9 309 50.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 5.5e-79 298.5 196 75.5
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.5e-78 295.8 226 65.9
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.6e-78 295.4 192 77.6
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-77 293.9 227 67.0
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.9e-76 290.0 229 65.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 4.3e-76 288.9 213 66.2
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.2e-75 284.6 210 69.5
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.4e-74 283.1 205 71.2
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.5e-73 278.9 219 65.3
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-73 278.1 230 63.0
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.0e-69 267.7 195 68.7
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.2e-67 260.0 203 68.0
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.9e-65 251.9 179 69.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 8.5e-64 248.1 237 56.1
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.4e-61 240.7 210 58.6
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.3e-61 240.0 210 58.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 5.1e-61 238.8 214 60.3
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-60 236.9 152 76.3
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 5.7e-60 235.3 209 57.4
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.1e-58 229.2 231 53.2
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.5e-57 227.3 133 83.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-54 217.6 144 74.3
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-50 203.4 124 81.5
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-48 197.6 144 69.4
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 3.0e-45 186.4 172 58.1
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.0e-45 186.4 142 66.9
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.3e-42 175.6 134 65.7
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 3.5e-41 172.9 140 60.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.3e-40 171.0 135 63.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 5.0e-40 169.1 119 69.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.5e-39 167.5 225 43.1
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 8.0e-38 161.8 146 59.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.0e-37 161.4 142 54.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.2e-35 153.7 194 46.9
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.1e-34 151.4 98 76.5
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.4e-34 151.0 85 83.5
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 4.1e-34 149.4 126 61.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 7.0e-34 148.7 190 43.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 7.7e-33 145.2 85 85.9
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.7e-32 144.1 108 69.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 2.9e-32 143.3 97 79.4
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-31 141.0 129 55.8
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.7e-30 136.7 100 71.0
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.0e-29 134.8 85 76.5
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-29 134.8 77 88.3
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.0e-29 134.8 88 76.1
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.0e-29 133.3 85 74.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 4.0e-29 132.9 82 81.7
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.7e-27 127.5 95 70.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.7e-27 126.3 124 54.8
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.2e-25 121.3 85 71.8
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 4.5e-25 119.4 115 53.9
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-23 114.8 85 68.2
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-23 114.4 76 75.0
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 4.2e-23 112.8 74 73.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 8.0e-22 108.6 125 48.8
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 3.5e-17 93.2 61 72.1
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-16 90.9 77 61.0
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 4.3e-15 86.3 51 78.4
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 6.1e-14 82.4 84 52.4
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.3e-13 80.5 187 29.4
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.8e-13 79.0 70 54.3
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-12 77.8 61 62.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 7.5e-12 75.5 67 58.2
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.9e-11 73.6 187 28.9
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.7e-11 73.2 219 27.9
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.9e-10 70.9 49 67.3


User provided reference genes

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