Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013380.1 Solanum lycopersicum HOM05D002692 ORTHO05D002971 4.5e-17 90.1 44 100.0
CAN.G993.38 Capsicum annuum HOM05D002692 ORTHO05D002971 1.2e-12 75.5 39 92.3
PGSC0003DMG400006539 Solanum tuberosum HOM05D002692 ORTHO05D002971 1.2e-12 75.5 39 92.3
Lsat_1_v5_gn_6_111081 Lactuca sativa HOM05D002692 ORTHO05D002971 3.4e-12 73.9 38 92.1
Nitab4.5_0004737g0070 Nicotiana tabacum HOM05D002692 ORTHO05D002971 3.4e-12 73.9 38 92.1
HanXRQChr08g0229261 Helianthus annuus HOM05D002692 ORTHO05D002971 1.3e-11 72.0 38 89.5
SalBow6G6452 Salvia bowleyana HOM05D002692 ORTHO05D002971 2.2e-11 71.2 39 84.6
Ciclev10001980m.g Citrus clementina HOM05D002692 ORTHO05D002971 2.8e-11 70.9 38 86.8
FvH4_5g38490 Fragaria vesca HOM05D002692 ORTHO05D002971 2.8e-11 70.9 38 89.5
FAN04G3156 Fragaria x ananassa HOM05D002692 ORTHO05D002971 2.8e-11 70.9 38 89.5
FAN13G3221 Fragaria x ananassa HOM05D002692 ORTHO05D002971 2.8e-11 70.9 38 89.5
FAN18G3230 Fragaria x ananassa HOM05D002692 ORTHO05D002971 2.8e-11 70.9 38 89.5
Peaxi162Scf01080g00006 Petunia axillaris HOM05D002692 ORTHO05D002971 2.8e-11 70.9 38 86.8
MSTRG.24143 Avicennia marina HOM05D002692 ORTHO05D002971 4.8e-11 70.1 36 91.7
CANSAT25G1044 Cannabis sativa HOM05D002692 ORTHO05D002971 6.3e-11 69.7 38 84.2
MD00G1103800 Malus domestica HOM05D002692 ORTHO05D002971 6.3e-11 69.7 38 86.8
Nitab4.5_0000051g0240 Nicotiana tabacum HOM05D002692 ORTHO05D002971 6.3e-11 69.7 40 82.5
Atru.chr13.1306 Acer truncatum HOM05D002692 ORTHO05D002971 8.3e-11 69.3 39 82.1
ECA246G1914 Erigeron canadensis HOM05D002692 ORTHO05D002971 8.3e-11 69.3 38 84.2
Gohir.D05G233700 Gossypium hirsutum HOM05D002692 ORTHO05D002971 8.3e-11 69.3 38 84.2
Gorai.009G241800 Gossypium raimondii HOM05D002692 ORTHO05D002971 8.3e-11 69.3 38 84.2
TAR293G0002 Trochodendron aralioides HOM05D002692 ORTHO05D002971 8.3e-11 69.3 38 84.2
Dinv26728 Davidia involucrata HOM05D002692 ORTHO05D002971 1.1e-10 68.9 38 81.6
Gohir.A05G231200 Gossypium hirsutum HOM05D002692 ORTHO05D002971 1.1e-10 68.9 38 84.2
SGA_v2.0_scaffold25G11088 Striga asiatica HOM05D002692 ORTHO05D002971 1.1e-10 68.9 36 88.9
COL.COLO4_16530 Corchorus olitorius HOM05D002692 ORTHO05D002971 1.4e-10 68.6 38 84.2
DCAR_014787 Daucus carota HOM05D000021 ORTHO05D000010 1.4e-10 68.6 36 91.7
Migut.N03330 Erythranthe guttata HOM05D002692 ORTHO05D002971 1.4e-10 68.6 36 88.9
Oeu001998.1 Olea europaea HOM05D002692 ORTHO05D002971 1.4e-10 68.6 38 84.2
RcHm_v2.0_Chr7g0240521 Rosa chinensis HOM05D002692 ORTHO05D002971 1.4e-10 68.6 38 86.8
Haze_00538 Corylus avellana HOM05D002692 ORTHO05D002971 2.4e-10 67.8 38 84.2
Thecc.08G115800 Theobroma cacao HOM05D002692 ORTHO05D002971 2.4e-10 67.8 38 81.6
Hma1.2p1_0251F.1_g102600 Hydrangea macrophylla HOM05D002692 ORTHO05D002971 3.1e-10 67.4 38 84.2
unitig_578.g16297 Utricularia gibba HOM05D002692 ORTHO05D002971 3.1e-10 67.4 37 81.1
Actinidia02583 Actinidia chinensis HOM05D002692 ORTHO05D002971 4.1e-10 67.0 38 81.6
CSS0030574 Camellia sinensis var. sinensis HOM05D002692 ORTHO05D002971 4.1e-10 67.0 38 81.6
Dinv27391 Davidia involucrata HOM05D002692 ORTHO05D005280 4.1e-10 67.0 38 84.2
MBI16_g07655_MAGBIO Magnolia biondii HOM05D002692 ORTHO05D002971 4.1e-10 67.0 38 81.6
MD15G1359500 Malus domestica HOM05D002692 ORTHO05D002971 4.1e-10 67.0 38 81.6
Potri.002G090000 Populus trichocarpa HOM05D002692 ORTHO05D002971 4.1e-10 67.0 38 78.9
ATR0584G063 Amborella trichopoda HOM05D002692 ORTHO05D002971 5.4e-10 66.6 38 81.6
QL12p035427 Quercus lobata HOM05D002692 ORTHO05D002971 5.4e-10 66.6 38 81.6
arahy.Tifrunner.gnm1.ann1.AL94LI Arachis hypogaea HOM05D002692 ORTHO05D002971 7.0e-10 66.2 36 83.3
AUR62023600 Chenopodium quinoa HOM05D002692 ORTHO05D002971 7.0e-10 66.2 38 81.6
AUR62004682 Chenopodium quinoa HOM05D002692 ORTHO05D002971 9.1e-10 65.9 37 83.8
Rhsim06G0110000 Rhododendron simsii HOM05D002692 ORTHO05D002971 9.1e-10 65.9 38 81.6
Sabra02G0070900 Salix brachista HOM05D002692 ORTHO05D002971 9.1e-10 65.9 38 78.9
Sc01g0001600 Simmondsia chinensis HOM05D002692 ORTHO05D002971 9.1e-10 65.9 39 76.9
HPP92_005741 Vanilla planifolia HOM05D002692 ORTHO05D002971 9.1e-10 65.9 38 76.3
Duzib093G0586 Durio zibethinus HOM05D002692 ORTHO05D002971 1.6e-09 65.1 37 81.1
Nn5g27937 Nelumbo nucifera HOM05D002692 ORTHO05D002971 1.6e-09 65.1 38 76.3
Lj4A547G40 Lonicera japonica HOM05D002692 ORTHO05D002971 2.0e-09 64.7 38 78.9
Lj4A576G35 Lonicera japonica HOM05D002692 ORTHO05D002971 2.0e-09 64.7 38 78.9
TWI36G0527 Tripterygium wilfordii HOM05D002692 ORTHO05D002971 2.0e-09 64.7 38 81.6
Manes.18G072300 Manihot esculenta HOM05D002692 ORTHO05D002971 2.7e-09 64.3 38 78.9
arahy.Tifrunner.gnm1.ann1.312JJI Arachis hypogaea HOM05D002692 ORTHO05D002971 3.5e-09 63.9 36 80.6
Prupe.1G507100 Prunus persica HOM05D002692 ORTHO05D002971 3.5e-09 63.9 38 76.3
EL10Ac1g00047 Beta vulgaris HOM05D002692 ORTHO05D002971 4.5e-09 63.5 38 76.3
GSVIVG01008951001 Vitis vinifera HOM05D002692 ORTHO05D002971 4.5e-09 63.5 38 78.9
CiPaw.05G230100 Carya illinoinensis HOM05D002692 ORTHO05D002971 5.9e-09 63.2 36 83.3
Eucgr.F04384 Eucalyptus grandis HOM05D002692 ORTHO05D002971 7.7e-09 62.8 36 77.8
Manes.02G158100 Manihot esculenta HOM05D002692 ORTHO05D002971 7.7e-09 62.8 38 76.3
Hund16817 Selenicereus undatus HOM05D002692 ORTHO05D002971 7.7e-09 62.8 36 80.6
Ah.07g205270 Amaranthus hybridus HOM05D002692 ORTHO05D002971 1.0e-08 62.4 38 71.1
Ah.16g109720 Amaranthus hybridus HOM05D002692 ORTHO05D002971 1.0e-08 62.4 38 71.1
Cfa015950 Carpinus fangiana HOM05D002692 ORTHO05D002971 1.0e-08 62.4 38 78.9
BcaC07g37488 Brassica carinata HOM05D002692 ORTHO05D002971 1.7e-08 61.6 36 72.2
A08p07900 Brassica napus HOM05D002692 ORTHO05D002971 1.7e-08 61.6 36 72.2
BolC8t47805H Brassica oleracea HOM05D002692 ORTHO05D002971 1.7e-08 61.6 36 72.2
BraA08t32810Z Brassica rapa HOM05D002692 ORTHO05D002971 1.7e-08 61.6 36 72.2
Cpa.g.sc49.121 Carica papaya HOM05D002692 ORTHO05D002971 2.2e-08 61.2 38 71.1
CDE08G1637 Ceratophyllum demersum HOM05D002692 ORTHO05D002971 2.9e-08 60.8 38 68.4
AT1G36390 Arabidopsis thaliana HOM05D002692 ORTHO05D002971 3.8e-08 60.5 36 72.2
Carub.0001s3376 Capsella rubella HOM05D002692 ORTHO05D002971 3.8e-08 60.5 36 72.2
Lalb_Chr11g0065631 Lupinus albus HOM05D002692 ORTHO05D002971 3.8e-08 60.5 36 75.0
Aqoxy6G00149 Aquilegia oxysepala HOM05D002692 ORTHO05D002971 6.5e-08 59.7 35 80.0
CARHR035040 Cardamine hirsuta HOM05D002692 ORTHO05D002971 6.5e-08 59.7 36 72.2
Cc01_g05820 Coffea canephora HOM05D002692 ORTHO05D002971 6.5e-08 59.7 38 73.7
ClCG08G010900 Citrullus lanatus HOM05D002692 ORTHO05D002971 1.5e-07 58.5 38 68.4
Thhalv10025813m.g Eutrema salsugineum HOM05D002692 ORTHO05D002971 1.5e-07 58.5 36 69.4
Sp1g31140 Schrenkiella parvula HOM05D002692 ORTHO05D002971 1.5e-07 58.5 36 69.4
TPR.G32939 Trifolium pratense HOM05D002692 ORTHO05D002971 1.5e-07 58.5 36 75.0
AL1G51030 Arabidopsis lyrata HOM05D002692 ORTHO05D002971 1.9e-07 58.2 36 66.7
MELO3C011373.2 Cucumis melo HOM05D002692 ORTHO05D002971 1.9e-07 58.2 38 68.4
CsaV3_1G023030 Cucumis sativus L. HOM05D002692 ORTHO05D002971 1.9e-07 58.2 38 68.4
Phvul.009G026300 Phaseolus vulgaris HOM05D002692 ORTHO05D002971 1.9e-07 58.2 36 75.0
Aa31LG6G9020 Aethionema arabicum HOM05D002692 ORTHO05D002971 2.5e-07 57.8 36 72.2
Potri.005G171201 Populus trichocarpa HOM05D002692 ORTHO05D002971 2.5e-07 57.8 38 65.8
VMungo1309G2912 Vigna mungo HOM05D002692 ORTHO05D002971 2.5e-07 57.8 36 72.2
CDE06G0979 Ceratophyllum demersum HOM05D002692 ORTHO05D002971 3.2e-07 57.4 38 63.2
PSO170G1486 Papaver somniferum HOM05D002692 ORTHO05D002971 3.2e-07 57.4 38 68.4
Lj1g0021040 Lotus japonicus HOM05D002692 ORTHO05D002971 4.2e-07 57.0 36 69.4
PSO170G3803 Papaver somniferum HOM05D002692 ORTHO05D002971 4.2e-07 57.0 37 70.3
Zm00001eb082750 Zea mays HOM05D002692 ORTHO05D002971 4.2e-07 57.0 38 71.1
Pp3c12_24950 Physcomitrium patens HOM05D002692 ORTHO05D002971 5.5e-07 56.6 36 72.2
Sed0015738 Sechium edule HOM05D002692 ORTHO05D002971 5.5e-07 56.6 38 65.8
Ca_25766_v3 Cicer arietinum L. HOM05D002692 ORTHO05D002971 1.2e-06 55.5 36 72.2
Os04g0431100 Oryza sativa ssp. japonica HOM05D002692 ORTHO05D002971 1.6e-06 55.1 38 65.8
PSO017G2310 Papaver somniferum HOM05D002692 ORTHO05D002971 1.6e-06 55.1 38 68.4
Medtr3g073450 Medicago truncatula HOM05D002692 ORTHO05D002971 2.1e-06 54.7 36 69.4
Glyma.06G108000 Glycine max HOM05D002692 ORTHO05D002971 3.6e-06 53.9 36 66.7
Psat5g135800 Pisum sativum HOM05D002692 ORTHO05D002971 3.6e-06 53.9 36 69.4
SMO351G0488 Selaginella moellendorffii HOM05D002692 ORTHO05D002971 3.6e-06 53.9 36 66.7
Ah.12g062070 Amaranthus hybridus HOM05D002692 ORTHO05D002971 6.1e-06 53.1 40 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5173 Anthoceros agrestis HOM05D002692 ORTHO05D002971 6.1e-06 53.1 38 63.2
unitig_0.g589 Utricularia gibba HOM05D002692 ORTHO05D002971 8.0e-06 52.8 36 69.4


User provided reference genes

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