Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2550.0 1288 100.0
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2521.9 1288 99.1
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2415.2 1288 94.9
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2312.7 1406 85.9
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2265.3 1288 87.4
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2265.0 1288 87.8
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2245.7 1288 85.4
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2230.7 1288 85.4
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2228.0 1288 86.0
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2223.7 1288 84.9
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2223.0 1288 85.0
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2221.0 1287 85.9
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2219.9 1287 85.7
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2212.2 1287 85.3
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2211.8 1287 86.2
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2208.7 1288 84.8
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2207.9 1287 85.1
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2205.6 1302 84.8
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2196.4 1288 84.9
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2194.9 1287 84.6
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2190.2 1288 85.2
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2187.9 1288 84.4
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2184.5 1287 84.6
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2184.1 1293 84.5
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2181.8 1288 84.2
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2180.6 1288 84.2
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2176.4 1285 84.6
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2176.4 1288 83.8
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2173.3 1289 83.9
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2172.5 1289 84.1
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2169.8 1293 84.2
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2169.4 1288 83.9
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2167.9 1289 83.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2167.1 1288 83.7
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2166.7 1291 83.9
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2164.8 1301 83.1
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2159.0 1301 83.4
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2153.6 1295 83.2
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2153.6 1288 83.5
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2150.9 1289 83.0
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2148.6 1326 81.6
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2140.5 1289 82.8
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2133.2 1289 83.1
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2126.7 1304 81.9
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2122.8 1288 82.1
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2122.4 1304 81.7
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2117.4 1295 82.7
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2115.1 1288 82.2
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2114.0 1287 82.1
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2113.2 1286 81.9
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2111.6 1297 81.4
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2110.9 1286 81.6
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2110.1 1286 81.6
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2108.2 1295 81.2
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2107.8 1286 81.4
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2106.6 1287 81.9
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2102.4 1288 82.0
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2101.2 1288 81.7
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2097.4 1290 81.2
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2095.1 1312 80.9
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1294 81.5
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1298 80.7
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2085.8 1288 81.1
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2077.8 1215 84.1
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2075.1 1308 80.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2075.1 1290 80.9
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2064.7 1293 80.0
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2062.3 1289 80.4
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2054.6 1294 79.8
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2054.3 1288 80.3
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 2038.5 1174 85.8
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2020.4 1299 78.5
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1933.3 1549 66.8
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1924.8 1293 75.3
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1922.1 1223 78.7
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1892.9 1290 74.2
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1885.2 1289 74.9
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1748.4 1316 70.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1693.3 911 92.5
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1618.6 955 84.5
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1608.6 951 84.6
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1583.9 1069 76.0
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1572.0 942 81.8
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1554.3 908 83.8
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1526.9 1210 66.0
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1522.3 1182 66.8
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1511.5 1293 60.0
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1483.8 915 80.3
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1480.3 939 78.2
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1478.4 1300 58.2
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1469.1 1329 56.6
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1453.7 1290 56.9
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1433.3 911 78.3
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1432.9 913 78.3
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1403.3 840 82.5
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1382.9 956 73.5
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1313.5 1309 52.3
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1265.8 917 69.0
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1119.0 687 82.1
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.1e-304 1050.4 803 71.6
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.1e-243 847.8 828 57.0
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 6.6e-241 838.6 476 88.4
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 3.1e-214 750.0 499 77.2
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.9e-208 730.7 451 82.5
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 5.3e-198 696.0 552 65.2
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 7.1e-187 659.1 347 98.0
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 7.2e-179 632.5 347 92.2
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 5.7e-176 622.9 347 91.1
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.3e-175 621.7 420 72.9
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 5.0e-172 609.8 353 88.1
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 9.1e-166 589.0 347 87.0
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.6e-165 587.4 451 67.0
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 6.7e-161 572.8 347 85.0
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 3.8e-156 557.0 347 83.0
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 6.5e-156 556.2 410 72.0
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 3.3e-152 543.9 336 79.2
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.6e-149 535.0 376 71.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 4.5e-149 533.5 637 45.8
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 5.0e-148 530.0 274 98.5
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.0e-144 518.1 420 68.3
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.2e-138 498.8 303 80.9
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.3e-127 462.2 253 93.3
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.2e-122 443.4 301 72.1
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 3.9e-116 424.1 244 86.5
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 6.6e-116 423.3 274 81.8
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.4e-110 405.6 347 62.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.0e-104 385.2 260 78.1
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 4.9e-103 380.6 256 79.7
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.5e-85 321.2 264 62.5
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.4e-73 282.7 154 92.2
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-69 269.6 466 33.9
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.7e-69 268.5 167 78.4
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-61 243.0 134 89.6
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 3.9e-60 238.0 130 92.3
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.7e-60 237.3 426 38.3
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 1.2e-56 226.5 127 87.4
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 1.2e-56 226.5 134 84.3
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 5.5e-54 217.6 142 73.2
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.4e-49 202.2 119 82.4
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.8e-42 178.7 127 67.7
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 5.9e-40 171.0 123 72.4
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-37 163.3 161 53.4
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.4e-36 159.8 99 77.8
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 8.8e-36 157.1 99 76.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.5e-35 156.4 128 68.0
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 7.5e-35 154.1 123 66.7
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.5e-35 154.1 113 66.4
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.2e-30 138.3 95 63.2
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.8e-25 122.9 133 47.4
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 5.9e-24 117.9 74 78.4
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 5.9e-24 117.9 74 77.0
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 5.5e-22 111.3 73 75.3
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 9.5e-22 110.5 72 72.2
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 2.1e-21 109.4 130 50.0
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 7.8e-16 90.9 99 53.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.8e-13 82.4 54 75.9
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 2.6e-11 75.9 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.1e-09 68.6 142 35.2
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.9e-06 59.7 34 76.5


User provided reference genes

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