Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 1.3e-143 513.1 258 100.0
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 5.2e-81 305.1 257 66.1
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 5.6e-67 258.5 138 89.1
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 6.9e-57 224.9 200 59.5
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.9e-46 190.3 172 54.7
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 6.1e-45 185.3 173 53.2
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 7.9e-45 184.9 196 49.5
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 1.6e-42 177.2 175 49.7
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 1.6e-42 177.2 175 48.0
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 2.2e-42 176.8 210 44.8
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 4.8e-42 175.6 245 42.9
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 8.2e-42 174.9 166 53.6
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 1.1e-41 174.5 176 49.4
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 3.1e-41 172.9 203 45.8
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 9.0e-41 171.4 263 40.7
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 7.7e-40 168.3 201 45.3
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 1.4e-38 164.1 214 42.5
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 2.5e-38 163.3 247 40.9
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 3.2e-38 162.9 191 44.5
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 4.2e-38 162.5 178 45.5
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 4.2e-38 162.5 178 47.2
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 1.2e-37 161.0 182 44.5
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 2.1e-37 160.2 259 39.4
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 2.1e-37 160.2 262 37.0
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 2.1e-37 160.2 267 40.1
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 2.7e-37 159.8 256 39.5
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 3.6e-37 159.5 189 42.9
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 4.6e-37 159.1 256 39.8
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 1.0e-36 157.9 177 45.2
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 1.8e-36 157.1 256 39.5
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 3.0e-36 156.4 158 51.3
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 3.9e-36 156.0 186 45.7
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 8.8e-36 154.8 186 41.4
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 8.8e-36 154.8 89 87.6
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 3.3e-35 152.9 166 48.8
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 7.4e-35 151.8 209 39.2
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 7.4e-35 151.8 180 42.2
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 7.4e-35 151.8 180 42.2
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 3.7e-34 149.4 181 41.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 4.8e-34 149.1 183 43.7
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 1.4e-33 147.5 198 37.4
Nitab4.5_0015422g0020 Nicotiana tabacum HOM05D007829 ORTHO05D009903 1.8e-33 147.1 259 42.5
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 3.1e-33 146.4 212 39.2
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 6.9e-33 145.2 226 38.1
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 6.9e-33 145.2 174 40.8
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 1.2e-32 144.4 259 35.5
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 1.5e-32 144.1 162 46.9
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 2.6e-32 143.3 193 38.9
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 2.9e-31 139.8 194 36.1
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 1.1e-30 137.9 122 54.1
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 1.9e-30 137.1 203 37.9
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 1.6e-29 134.0 187 38.0
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 4.7e-29 132.5 213 35.2
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 1.8e-28 130.6 178 37.6
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 2.3e-28 130.2 146 41.8
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 1.1e-27 127.9 145 42.8
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 3.3e-27 126.3 142 43.0
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 4.4e-27 125.9 167 39.5
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 4.4e-27 125.9 217 35.0
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 9.7e-27 124.8 142 42.3
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 3.7e-26 122.9 145 43.4
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 4.8e-26 122.5 248 31.9
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 4.8e-26 122.5 96 57.3
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 8.2e-26 121.7 229 34.5
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 1.1e-25 121.3 202 37.1
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 2.4e-25 120.2 148 40.5
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.5e-24 116.3 146 41.1
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 3.5e-24 116.3 143 39.2
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 1.7e-23 114.0 174 38.5
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 3.8e-23 112.8 233 30.5
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 9.4e-22 108.2 116 46.6
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 4.4e-19 99.4 180 33.3
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 2.2e-18 97.1 149 34.9
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 2.2e-18 97.1 140 39.3
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 4.8e-18 95.9 168 38.1
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 1.1e-17 94.7 92 48.9
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 1.2e-16 91.3 161 41.0
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 5.0e-15 85.9 117 37.6
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 1.1e-14 84.7 148 34.5
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 6.1e-13 79.0 110 38.2
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 1.8e-12 77.4 104 42.3
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 3.4e-11 73.2 132 29.5
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 3.7e-10 69.7 139 28.1
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 2.4e-09 67.0 116 30.2
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 3.1e-09 66.6 133 29.3
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 4.1e-09 66.2 151 29.1
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 5.4e-09 65.9 117 31.6
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 9.1e-09 65.1 168 27.4
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 1.6e-08 64.3 142 26.8
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 2.0e-08 63.9 132 30.3
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 2.7e-08 63.5 132 30.3
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 3.5e-08 63.2 149 28.9
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 4.5e-08 62.8 119 30.3
SEGI_29799 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.3e-07 61.2 113 29.2
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 1.7e-07 60.8 137 29.2
CDE11G0610 Ceratophyllum demersum HOM05D002745 ORTHO05D002945 1.7e-07 60.8 115 30.4
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 1.7e-07 60.8 128 28.1
CANSAT56G3529 Cannabis sativa HOM05D002745 ORTHO05D002945 2.9e-07 60.1 203 25.1
Gohir.A13G153132 Gossypium hirsutum HOM05D002745 ORTHO05D002945 2.9e-07 60.1 131 26.0
CARHR291200 Cardamine hirsuta HOM05D002745 ORTHO05D002945 3.8e-07 59.7 130 30.8
Thhalv10019116m.g Eutrema salsugineum HOM05D002745 ORTHO05D002945 3.8e-07 59.7 138 29.7
AL2G31140 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 8.5e-07 58.5 130 30.8
Eucgr.E00649 Eucalyptus grandis HOM05D002745 ORTHO05D002945 8.5e-07 58.5 116 29.3
AT1G71480 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 1.1e-06 58.2 130 30.8
SalBow7G1915 Salvia bowleyana HOM05D000972 ORTHO05D007902 1.5e-06 57.8 133 27.8
Carub.0002s1834 Capsella rubella HOM05D002745 ORTHO05D002945 2.5e-06 57.0 130 30.8
Pp3c17_5580 Physcomitrium patens HOM05D002745 ORTHO05D002945 2.5e-06 57.0 112 27.7
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 2.5e-06 57.0 77 36.4
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 5.5e-06 55.8 60 41.7
Aa31LG4G9110 Aethionema arabicum HOM05D002745 ORTHO05D002945 7.2e-06 55.5 123 29.3


User provided reference genes

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