Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.1e-85 318.9 151 100.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 2.8e-82 308.5 150 96.7
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 7.6e-80 300.4 150 94.0
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 3.4e-64 248.4 151 77.5
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.2e-61 240.0 149 78.5
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 9.6e-51 203.8 148 68.9
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.5e-46 188.0 148 65.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 5.7e-43 177.9 141 61.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 9.6e-43 177.2 147 60.5
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.6e-42 176.4 146 60.3
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 2.5e-38 162.5 137 54.7
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 3.6e-37 158.7 140 55.7
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 4.6e-37 158.3 143 56.6
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.1e-37 157.9 145 53.1
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.9e-36 155.2 140 53.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.9e-36 155.2 140 53.6
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 3.9e-36 155.2 146 52.7
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.1e-35 153.7 145 53.1
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.3e-35 151.8 148 52.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 7.4e-35 151.0 142 53.5
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 7.4e-35 151.0 137 54.0
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 9.7e-35 150.6 135 55.6
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.7e-34 148.7 140 52.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 8.2e-34 147.5 145 51.7
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 8.2e-34 147.5 135 54.8
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.1e-33 147.1 150 53.3
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.1e-33 145.6 97 70.1
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 3.1e-33 145.6 152 50.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 9.1e-33 144.1 152 51.3
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.2e-32 143.7 145 47.6
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.5e-32 143.3 147 51.0
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 3.4e-32 142.1 139 50.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 7.7e-32 141.0 147 49.0
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.2e-31 139.4 151 50.3
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.9e-31 139.0 148 48.0
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.9e-31 139.0 147 51.0
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 5.0e-31 138.3 151 48.3
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 5.0e-31 138.3 151 48.3
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 8.5e-31 137.5 151 48.3
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 8.5e-31 137.5 154 48.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 8.5e-31 137.5 138 50.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.9e-30 136.3 151 47.0
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.2e-30 135.6 138 49.3
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 3.2e-30 135.6 150 46.7
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 5.5e-30 134.8 148 50.7
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 5.5e-30 134.8 155 47.1
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.2e-29 133.7 150 50.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.1e-29 132.9 148 46.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 2.7e-29 132.5 150 48.7
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.6e-29 131.7 152 46.1
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.6e-29 131.7 152 46.1
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 4.6e-29 131.7 139 48.9
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 4.6e-29 131.7 154 46.1
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.1e-29 131.3 151 45.7
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 6.1e-29 131.3 150 44.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 6.1e-29 131.3 159 47.2
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 6.1e-29 131.3 143 49.0
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 6.1e-29 131.3 143 49.0
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.0e-28 130.6 150 44.7
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.0e-28 130.6 137 48.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.8e-28 129.8 140 49.3
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.8e-28 129.8 140 50.7
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.8e-28 129.8 152 48.0
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 2.3e-28 129.4 152 43.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.0e-28 129.0 150 44.7
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.9e-28 128.6 151 47.7
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.9e-28 128.6 148 48.6
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 5.1e-28 128.3 140 48.6
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.7e-28 127.9 143 46.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 6.7e-28 127.9 144 49.3
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.5e-27 126.7 149 46.3
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.0e-27 126.3 139 47.5
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.0e-27 126.3 133 45.1
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.3e-27 125.6 132 50.0
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 4.4e-27 125.2 148 48.6
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.4e-27 125.2 133 44.4
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 5.7e-27 124.8 138 47.8
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 7.4e-27 124.4 149 45.6
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 7.4e-27 124.4 152 44.1
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.3e-26 123.6 137 43.1
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.7e-26 123.2 149 45.6
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 1.7e-26 123.2 147 45.6
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.8e-26 122.5 136 48.5
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.7e-26 122.1 157 46.5
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 3.7e-26 122.1 153 43.8
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 4.8e-26 121.7 147 44.9
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 6.3e-26 121.3 136 47.1
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 8.2e-26 120.9 140 47.1
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.1e-25 120.6 139 46.8
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.1e-25 120.6 132 49.2
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.1e-25 120.6 147 43.5
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.4e-25 119.4 148 41.9
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 4.1e-25 118.6 140 45.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 5.3e-25 118.2 148 40.5
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 9.1e-25 117.5 155 40.6
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 9.1e-25 117.5 140 44.3
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.2e-24 117.1 146 45.2
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-24 117.1 136 41.2
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.5e-24 116.7 141 48.2
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 4.5e-24 115.2 136 42.6
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 5.9e-24 114.8 152 41.4
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.7e-24 114.4 136 42.6
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.7e-24 114.4 135 40.0
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 7.7e-24 114.4 141 46.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.0e-23 114.0 150 46.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.0e-23 114.0 143 43.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-23 113.6 136 43.4
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.3e-23 113.6 142 45.8
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-23 113.2 130 44.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 2.2e-23 112.8 139 41.7
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.2e-23 112.8 144 42.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.2e-23 112.8 136 42.6
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.9e-23 112.5 137 41.6
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.0e-23 111.7 142 45.1
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 5.0e-23 111.7 136 41.9
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 6.5e-23 111.3 136 41.2
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 6.5e-23 111.3 136 41.2
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 8.5e-23 110.9 136 41.2
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.1e-22 110.5 154 40.3
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.1e-22 110.5 159 43.4
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.5e-22 109.4 137 40.1
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.2e-22 107.8 139 40.3
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 9.4e-22 107.5 136 40.4
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 9.4e-22 107.5 136 40.4
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.6e-21 106.7 139 40.3
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-21 106.7 137 41.6
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.6e-21 106.7 141 46.1
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 2.1e-21 106.3 139 40.3
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 2.1e-21 106.3 139 40.3
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.1e-21 106.3 136 39.0
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.1e-21 106.3 136 41.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.7e-21 105.9 142 40.1
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.6e-21 105.5 139 40.3
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 4.7e-21 105.1 139 39.6
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 4.7e-21 105.1 139 39.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 6.1e-21 104.8 133 42.9
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 6.1e-21 104.8 139 39.6
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 6.1e-21 104.8 138 42.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.0e-20 104.0 139 40.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.4e-20 103.6 137 40.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.8e-20 103.2 137 40.1
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.8e-20 103.2 137 40.1
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-20 102.8 139 39.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 2.3e-20 102.8 136 39.0
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.3e-20 102.8 139 38.8
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 3.9e-20 102.1 137 39.4
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.7e-20 101.3 136 37.5
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 6.7e-20 101.3 139 38.8
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.7e-20 101.3 139 38.8
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 8.8e-20 100.9 136 39.0
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-19 100.1 139 38.8
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-19 100.1 136 38.2
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-19 100.1 139 38.8
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.3e-19 99.0 136 39.0
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 4.4e-19 98.6 98 49.0
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 9.7e-19 97.4 136 36.8
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-18 97.1 140 37.1
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.7e-18 96.7 140 36.4
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.2e-18 96.3 140 37.1
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 3.7e-18 95.5 136 37.5
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 6.3e-18 94.7 136 37.5
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 6.3e-18 94.7 136 37.5
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 8.2e-18 94.4 143 37.1
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.1e-17 94.0 134 39.6
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-17 93.6 143 36.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 7.0e-17 91.3 136 36.0
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 7.0e-17 91.3 136 36.0
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 7.0e-17 91.3 136 36.0
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 7.0e-17 91.3 136 36.0
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 7.0e-17 91.3 136 36.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.6e-16 90.1 103 45.6
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-16 89.0 126 36.5
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-16 89.0 136 36.0
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.0e-15 87.4 98 42.9
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 6.5e-15 84.7 90 43.3
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.1e-13 79.7 142 35.2
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.4e-12 77.0 146 36.3
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 8.8e-12 74.3 79 46.8


User provided reference genes

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