Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012060.2 Solanum lycopersicum HOM05D001859 ORTHO05D001836 1.3e-49 199.9 138 100.0
Sopen11g006850 Solanum pennellii HOM05D001859 ORTHO05D001836 2.6e-47 192.2 138 87.7
PGSC0003DMG400013338 Solanum tuberosum HOM05D001859 ORTHO05D001836 3.8e-46 188.3 138 87.7
Nitab4.5_0001198g0150 Nicotiana tabacum HOM05D001859 ORTHO05D001836 1.2e-23 113.6 140 59.3
Hma1.2p1_0298F.1_g117270 Hydrangea macrophylla HOM05D001859 ORTHO05D001836 3.1e-19 99.0 138 45.7
Gohir.D06G159000 Gossypium hirsutum HOM05D001859 ORTHO05D001836 2.6e-18 95.9 138 45.7
Gorai.010G185700 Gossypium raimondii HOM05D001859 ORTHO05D001836 2.6e-18 95.9 138 45.7
Nitab4.5_0000143g0420 Nicotiana tabacum HOM05D001859 ORTHO05D001836 4.4e-18 95.1 140 57.1
Sc17g0007670 Simmondsia chinensis HOM05D001859 ORTHO05D001836 7.5e-18 94.4 136 44.9
Thecc.06G231400 Theobroma cacao HOM05D001859 ORTHO05D001836 1.7e-17 93.2 137 44.5
Cc09_g01000 Coffea canephora HOM05D001859 ORTHO05D001836 2.2e-17 92.8 142 44.4
Duzib160G0325 Durio zibethinus HOM05D001859 ORTHO05D001836 2.9e-17 92.4 137 42.3
Duzib235G0175 Durio zibethinus HOM05D001859 ORTHO05D001836 2.9e-17 92.4 148 41.9
Gohir.A05G173500 Gossypium hirsutum HOM05D001859 ORTHO05D001836 1.1e-16 90.5 140 42.1
CSS0035216 Camellia sinensis var. sinensis HOM05D001859 ORTHO05D001836 1.4e-16 90.1 136 41.2
Gohir.D05G176500 Gossypium hirsutum HOM05D001859 ORTHO05D001836 3.2e-16 89.0 140 41.4
Gorai.009G181900 Gossypium raimondii HOM05D001859 ORTHO05D001836 3.2e-16 89.0 140 41.4
Peaxi162Scf00990g10013 Petunia axillaris HOM05D001859 ORTHO05D001836 7.0e-16 87.8 136 40.4
TAR626G0321 Trochodendron aralioides HOM05D001859 ORTHO05D001836 7.0e-16 87.8 140 50.7
Duzib192G0034 Durio zibethinus HOM05D001859 ORTHO05D001836 9.2e-16 87.4 137 44.5
VMungo1215G2321 Vigna mungo HOM05D001859 ORTHO05D001836 1.2e-15 87.0 140 42.9
Peaxi162Scf00558g00021 Petunia axillaris HOM05D001859 ORTHO05D001836 2.0e-15 86.3 139 56.1
SGA_v2.0_scaffold4G01887 Striga asiatica HOM05D001859 ORTHO05D001836 2.0e-15 86.3 138 46.4
TAR624G0820 Trochodendron aralioides HOM05D001859 ORTHO05D001836 3.5e-15 85.5 135 42.2
vmacro12147 Vaccinium macrocarpon HOM05D001859 ORTHO05D001836 4.6e-15 85.1 137 39.4
Eucgr.E03956 Eucalyptus grandis HOM05D001859 ORTHO05D001836 6.0e-15 84.7 146 39.0
Glyma.07G264800 Glycine max HOM05D001859 ORTHO05D001836 1.3e-14 83.6 137 38.0
Glyma.17G009200 Glycine max HOM05D001859 ORTHO05D001836 1.3e-14 83.6 136 37.5
Rhsim06G0169500 Rhododendron simsii HOM05D001859 ORTHO05D001836 1.3e-14 83.6 139 40.3
MSTRG.7175 Avicennia marina HOM05D001859 ORTHO05D001836 2.3e-14 82.8 138 49.3
Glyma.09G009200 Glycine max HOM05D001859 ORTHO05D001836 3.0e-14 82.4 135 46.7
MD10G1329600 Malus domestica HOM05D001859 ORTHO05D001836 3.0e-14 82.4 151 42.4
Nn1g07328 Nelumbo nucifera HOM05D001859 ORTHO05D001836 3.0e-14 82.4 136 41.2
Phvul.003G082900 Phaseolus vulgaris HOM05D001859 ORTHO05D001836 6.6e-14 81.3 136 37.5
Cfa000121 Carpinus fangiana HOM05D001859 ORTHO05D001836 8.6e-14 80.9 137 45.3
Rhsim13G0148000 Rhododendron simsii HOM05D001859 ORTHO05D001836 8.6e-14 80.9 138 44.2
Potri.004G001800 Populus trichocarpa HOM05D001859 ORTHO05D001836 1.1e-13 80.5 137 38.7
Gohir.A06G152600 Gossypium hirsutum HOM05D001859 ORTHO05D001836 1.9e-13 79.7 139 46.0
BcaB08g37434 Brassica carinata HOM05D001859 ORTHO05D001836 2.5e-13 79.3 151 36.4
MD05G1356500 Malus domestica HOM05D001859 ORTHO05D001836 2.5e-13 79.3 145 47.6
vmacro15778 Vaccinium macrocarpon HOM05D001859 ORTHO05D001836 2.5e-13 79.3 144 41.0
Dinv07387 Davidia involucrata HOM05D001859 ORTHO05D001836 4.3e-13 78.6 141 46.8
TAR627G0807 Trochodendron aralioides HOM05D001859 ORTHO05D001836 4.3e-13 78.6 141 39.7
Glyma.15G113700 Glycine max HOM05D001859 ORTHO05D001836 5.6e-13 78.2 142 40.1
Lsat_1_v5_gn_7_13381 Lactuca sativa HOM05D001859 ORTHO05D001836 5.6e-13 78.2 139 47.5
PGSC0003DMG400023561 Solanum tuberosum HOM05D001859 ORTHO05D001836 5.6e-13 78.2 137 40.9
MELO3C007428.2 Cucumis melo HOM05D001859 ORTHO05D001836 7.3e-13 77.8 142 43.0
AT1G12020 Arabidopsis thaliana HOM05D001859 ORTHO05D001836 1.2e-12 77.0 150 36.0
BolC8t52313H Brassica oleracea HOM05D001859 ORTHO05D001836 1.2e-12 77.0 136 33.8
COL.COLO4_31861 Corchorus olitorius HOM05D001859 ORTHO05D001836 1.2e-12 77.0 137 47.4
Oeu049725.1 Olea europaea HOM05D001859 ORTHO05D001836 1.2e-12 77.0 140 53.6
Prupe.4G012500 Prunus persica HOM05D001859 ORTHO05D001836 1.2e-12 77.0 136 40.4
Cpa.g.sc152.64 Carica papaya HOM05D001859 ORTHO05D001836 1.6e-12 76.6 136 47.1
PGR042G2503 Punica granatum HOM05D001859 ORTHO05D001836 1.6e-12 76.6 141 36.9
BcaC07g41753 Brassica carinata HOM05D001859 ORTHO05D001836 2.1e-12 76.3 136 33.8
C08p47760 Brassica napus HOM05D001859 ORTHO05D001836 2.1e-12 76.3 136 33.8
Nitab4.5_0008006g0070 Nicotiana tabacum HOM05D001859 ORTHO05D001836 2.1e-12 76.3 46 80.4
CiPaw.10G076600 Carya illinoinensis HOM05D001859 ORTHO05D001836 2.8e-12 75.9 142 40.8
Lj6g0027371 Lotus japonicus HOM05D001859 ORTHO05D001836 3.6e-12 75.5 150 45.3
Nitab4.5_0018980g0010 Nicotiana tabacum HOM05D001859 ORTHO05D001836 3.6e-12 75.5 46 80.4
QL08p030048 Quercus lobata HOM05D001859 ORTHO05D001836 3.6e-12 75.5 140 37.1
Ah.14g087730 Amaranthus hybridus HOM05D001859 ORTHO05D001836 4.7e-12 75.1 152 35.5
Ca_00711_v3 Cicer arietinum L. HOM05D001859 ORTHO05D001836 4.7e-12 75.1 135 40.7
MELO3C021703.2 Cucumis melo HOM05D001859 ORTHO05D001836 4.7e-12 75.1 138 37.0
Nn1g03351 Nelumbo nucifera HOM05D001859 ORTHO05D001836 4.7e-12 75.1 136 36.8
TWI63G1105 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 4.7e-12 75.1 136 36.0
BcaB03g13214 Brassica carinata HOM05D001859 ORTHO05D001836 6.2e-12 74.7 141 38.3
A08p33080 Brassica napus HOM05D001859 ORTHO05D001836 6.2e-12 74.7 143 35.0
A09p64140 Brassica napus HOM05D001859 ORTHO05D001836 6.2e-12 74.7 135 32.6
BraA08t35228Z Brassica rapa HOM05D001859 ORTHO05D001836 6.2e-12 74.7 143 35.0
BraA09t41760Z Brassica rapa HOM05D001859 ORTHO05D001836 6.2e-12 74.7 135 32.6
Haze_06900 Corylus avellana HOM05D001859 ORTHO05D001836 6.2e-12 74.7 138 43.5
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 6.2e-12 74.7 141 37.6
arahy.Tifrunner.gnm1.ann1.DG5972 Arachis hypogaea HOM05D001859 ORTHO05D001836 8.1e-12 74.3 142 36.6
Peaxi162Scf00442g00052 Petunia axillaris HOM05D001859 ORTHO05D001836 8.1e-12 74.3 140 40.7
SalBow8G3831 Salvia bowleyana HOM05D001859 ORTHO05D001836 8.1e-12 74.3 138 37.0
Psat1g177200 Pisum sativum HOM05D001859 ORTHO05D001836 1.1e-11 73.9 140 36.4
TWI36G0632 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 1.1e-11 73.9 137 35.0
CANSAT56G1712 Cannabis sativa HOM05D001859 ORTHO05D001836 1.4e-11 73.6 137 39.4
CARHR012370 Cardamine hirsuta HOM05D001859 ORTHO05D001836 1.4e-11 73.6 145 35.2
Nn2g13510 Nelumbo nucifera HOM05D001859 ORTHO05D001836 1.4e-11 73.6 138 34.1
Prupe.3G208400 Prunus persica HOM05D001859 ORTHO05D001836 1.4e-11 73.6 151 34.4
VMungo0540G2178 Vigna mungo HOM05D001859 ORTHO05D001836 1.4e-11 73.6 135 48.1
BcaC07g41737 Brassica carinata HOM05D001859 ORTHO05D001836 1.8e-11 73.2 147 36.1
Eucgr.D01385 Eucalyptus grandis HOM05D001859 ORTHO05D001836 2.3e-11 72.8 139 35.3
MD17G1108000 Malus domestica HOM05D001859 ORTHO05D001836 3.1e-11 72.4 142 34.5
SGA_v2.0_scaffold7G03772 Striga asiatica HOM05D001859 ORTHO05D001836 3.1e-11 72.4 143 45.5
Dinv13957 Davidia involucrata HOM05D001859 ORTHO05D001836 4.0e-11 72.0 47 76.6
Thhalv10010010m.g Eutrema salsugineum HOM05D001859 ORTHO05D001836 5.2e-11 71.6 137 34.3
Lalb_Chr18g0056891 Lupinus albus HOM05D001859 ORTHO05D001836 5.2e-11 71.6 137 33.6
Cfa014304 Carpinus fangiana HOM05D001859 ORTHO05D001836 6.8e-11 71.2 141 36.2
Potri.011G022900 Populus trichocarpa HOM05D001859 ORTHO05D001836 6.8e-11 71.2 143 41.3
BcaC05g25231 Brassica carinata HOM05D001859 ORTHO05D001836 8.9e-11 70.9 136 33.1
BraA06t24133Z Brassica rapa HOM05D001859 ORTHO05D001836 8.9e-11 70.9 135 34.1
Hma1.2p1_0405F.1_g145570 Hydrangea macrophylla HOM05D001859 ORTHO05D001836 8.9e-11 70.9 136 38.2
Thhalv10024108m.g Eutrema salsugineum HOM05D001859 ORTHO05D001836 1.2e-10 70.5 135 34.8
Oeu003171.1 Olea europaea HOM05D001859 ORTHO05D001836 1.2e-10 70.5 140 40.0
PGR042G3865 Punica granatum HOM05D001859 ORTHO05D001836 1.2e-10 70.5 137 32.8
QL03p008463 Quercus lobata HOM05D001859 ORTHO05D001836 1.2e-10 70.5 139 44.6
Sp1g10690 Schrenkiella parvula HOM05D001859 ORTHO05D001836 1.2e-10 70.5 155 33.5
MBI19_g29448_MAGBIO Magnolia biondii HOM05D001859 ORTHO05D001836 1.5e-10 70.1 136 33.8
QL10p003470 Quercus lobata HOM05D001859 ORTHO05D001836 1.5e-10 70.1 143 44.1
RcHm_v2.0_Chr5g0001691 Rosa chinensis HOM05D001859 ORTHO05D001836 1.5e-10 70.1 153 36.6
Ciclev10016596m.g Citrus clementina HOM05D001859 ORTHO05D001836 2.0e-10 69.7 137 54.0
Migut.M01381 Erythranthe guttata HOM05D001859 ORTHO05D001836 2.0e-10 69.7 136 47.8
Lsat_1_v5_gn_5_123300 Lactuca sativa HOM05D001859 ORTHO05D001836 2.0e-10 69.7 135 46.7
C05p11160 Brassica napus HOM05D001859 ORTHO05D001836 2.6e-10 69.3 136 33.1
BolC5t29862H Brassica oleracea HOM05D001859 ORTHO05D001836 2.6e-10 69.3 136 33.1
Sed0021259 Sechium edule HOM05D001859 ORTHO05D001836 2.6e-10 69.3 139 36.7
TWI75G1221 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 2.6e-10 69.3 138 31.2
C08p15130 Brassica napus HOM05D001859 ORTHO05D001836 3.4e-10 68.9 148 34.5
BolC8t49143H Brassica oleracea HOM05D001859 ORTHO05D001836 3.4e-10 68.9 148 34.5
Duzib138G0470 Durio zibethinus HOM05D001859 ORTHO05D001836 3.4e-10 68.9 136 32.4
Sc05g0009560 Simmondsia chinensis HOM05D001859 ORTHO05D001836 3.4e-10 68.9 145 39.3
MD09G1116300 Malus domestica HOM05D001859 ORTHO05D001836 4.4e-10 68.6 141 34.0
Sabra11G0013900 Salix brachista HOM05D001859 ORTHO05D001836 5.8e-10 68.2 143 39.9
THA.LOC104818580 Tarenaya hassleriana HOM05D001859 ORTHO05D001836 5.8e-10 68.2 137 35.8
TWI38G2307 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 5.8e-10 68.2 138 40.6
Aqoxy1G04153 Aquilegia oxysepala HOM05D001859 ORTHO05D001836 7.5e-10 67.8 137 39.4
unitig_748.g7596 Utricularia gibba HOM05D001859 ORTHO05D001836 7.5e-10 67.8 140 42.9
AL2G13460 Arabidopsis lyrata HOM05D001859 ORTHO05D001836 9.8e-10 67.4 135 34.1
AT1G62422 Arabidopsis thaliana HOM05D001859 ORTHO05D001836 9.8e-10 67.4 135 35.6
CARHR049500 Cardamine hirsuta HOM05D001859 ORTHO05D001836 9.8e-10 67.4 135 35.6
FvH4_3g01120 Fragaria vesca HOM05D001859 ORTHO05D001836 1.3e-09 67.0 145 35.2
ClCG01G021560 Citrullus lanatus HOM05D001859 ORTHO05D001836 1.7e-09 66.6 140 38.6
FAN25G0584 Fragaria x ananassa HOM05D001859 ORTHO05D001836 1.7e-09 66.6 138 36.2
Sed0007035 Sechium edule HOM05D001859 ORTHO05D001836 1.7e-09 66.6 133 35.3
Ciclev10016686m.g Citrus clementina HOM05D001859 ORTHO05D001836 2.2e-09 66.2 140 31.4
Medtr2g025410 Medicago truncatula HOM05D001859 ORTHO05D001836 2.2e-09 66.2 148 41.2
Cpa.g.sc132.38 Carica papaya HOM05D001859 ORTHO05D001836 3.7e-09 65.5 141 31.9
HanXRQChr15g0470041 Helianthus annuus HOM05D001859 ORTHO05D001836 3.7e-09 65.5 138 48.6
Phvul.006G144100 Phaseolus vulgaris HOM05D001859 ORTHO05D001836 3.7e-09 65.5 135 46.7
Thecc.01G184200 Theobroma cacao HOM05D001859 ORTHO05D001836 3.7e-09 65.5 136 30.9
Actinidia02325 Actinidia chinensis HOM05D001859 ORTHO05D001836 4.9e-09 65.1 41 73.2
GSVIVG01007239001 Vitis vinifera HOM05D001859 ORTHO05D001836 4.9e-09 65.1 38 84.2
Lalb_Chr20g0119161 Lupinus albus HOM05D001859 ORTHO05D001836 6.4e-09 64.7 135 47.4
Lsat_1_v5_gn_7_94860 Lactuca sativa HOM05D001859 ORTHO05D001836 8.3e-09 64.3 46 69.6
arahy.Tifrunner.gnm1.ann1.972LPJ Arachis hypogaea HOM05D001859 ORTHO05D001836 1.1e-08 63.9 146 39.7
Sopen04g006800 Solanum pennellii HOM05D001859 ORTHO05D001836 1.4e-08 63.5 137 36.5
EL10Ac8g20168 Beta vulgaris HOM05D001859 ORTHO05D001836 1.9e-08 63.2 147 43.5
Carub.0002s0255 Capsella rubella HOM05D001859 ORTHO05D001836 1.9e-08 63.2 42 69.0
Dinv08708 Davidia involucrata HOM05D001859 ORTHO05D001836 2.4e-08 62.8 42 71.4
HanXRQChr10g0306251 Helianthus annuus HOM05D001859 ORTHO05D001836 2.4e-08 62.8 135 46.7
Sp2g02190 Schrenkiella parvula HOM05D001859 ORTHO05D001836 2.4e-08 62.8 135 35.6
Actinidia26872 Actinidia chinensis HOM05D001859 ORTHO05D001836 3.2e-08 62.4 41 68.3
Dinv39762 Davidia involucrata HOM05D001859 ORTHO05D001836 3.2e-08 62.4 43 72.1
HanXRQChr12g0373731 Helianthus annuus HOM05D001859 ORTHO05D001836 3.2e-08 62.4 138 33.3
Sed0022678 Sechium edule HOM05D001859 ORTHO05D001836 3.2e-08 62.4 137 38.7
Lj4g0021228 Lotus japonicus HOM05D001859 ORTHO05D001836 9.2e-08 60.8 160 39.4
Rhsim02G0104000 Rhododendron simsii HOM05D001859 ORTHO05D001836 9.2e-08 60.8 53 60.4
ECA234G1243 Erigeron canadensis HOM05D001859 ORTHO05D001836 1.2e-07 60.5 138 44.2
unitig_32.g11541 Utricularia gibba HOM05D001859 ORTHO05D001836 1.2e-07 60.5 43 67.4
AL1G23260 Arabidopsis lyrata HOM05D001859 ORTHO05D001836 1.6e-07 60.1 138 36.2
THA.LOC104823538 Tarenaya hassleriana HOM05D001859 ORTHO05D001836 1.6e-07 60.1 41 68.3
ClCG01G009950 Citrullus lanatus HOM05D001859 ORTHO05D001836 2.7e-07 59.3 43 67.4
Lalb_Chr15g0087901 Lupinus albus HOM05D001859 ORTHO05D001836 2.7e-07 59.3 136 52.2
RcHm_v2.0_Chr2g0157771 Rosa chinensis HOM05D001859 ORTHO05D001836 4.6e-07 58.5 141 34.8
CiPaw.03G273700 Carya illinoinensis HOM05D001859 ORTHO05D001836 1.0e-06 57.4 144 33.3
Ah.09g234320 Amaranthus hybridus HOM05D001859 ORTHO05D001836 1.3e-06 57.0 139 31.7
CsaV3_6G048580 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.3e-06 57.0 49 59.2
TPR.G37073 Trifolium pratense HOM05D001859 ORTHO05D001836 1.3e-06 57.0 134 31.3
Haze_12751 Corylus avellana HOM05D001859 ORTHO05D001836 1.7e-06 56.6 137 34.3
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 2.3e-06 56.2 38 63.2
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 2.3e-06 56.2 38 63.2
Manes.12G058200 Manihot esculenta HOM05D001859 ORTHO05D001836 2.3e-06 56.2 146 29.5
unitig_92.g28108 Utricularia gibba HOM05D001859 ORTHO05D001836 2.3e-06 56.2 41 63.4
COL.COLO4_07262 Corchorus olitorius HOM05D001859 ORTHO05D001836 3.0e-06 55.8 41 53.7
BcaB02g06434 Brassica carinata HOM05D001859 ORTHO05D001836 3.9e-06 55.5 51 51.0
Carub.0001s1170 Capsella rubella HOM05D001859 ORTHO05D001836 5.1e-06 55.1 142 36.6
Atru.chr1.2488 Acer truncatum HOM05D001859 ORTHO05D001836 6.6e-06 54.7 142 42.3
FvH4_6g41890 Fragaria vesca HOM05D001859 ORTHO05D001836 6.6e-06 54.7 43 60.5
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 8.6e-06 54.3 33 75.8


User provided reference genes

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