Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 3.3e-214 748.0 367 100.0
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 4.5e-211 737.6 367 98.6
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 3.1e-204 714.9 367 95.6
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 6.2e-168 594.3 367 80.4
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 3.7e-165 585.1 311 90.0
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 9.8e-158 560.5 367 78.5
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 6.4e-149 531.2 371 72.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 6.2e-144 514.6 378 71.4
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.2e-142 510.4 372 69.4
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.2e-142 510.4 363 70.5
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 3.4e-142 508.8 347 72.6
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.3e-141 506.9 362 71.0
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.8e-141 505.4 293 84.3
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 3.8e-141 505.4 358 72.1
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 4.9e-141 505.0 364 71.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 8.4e-141 504.2 363 71.3
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.9e-140 503.1 369 69.4
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.4e-140 502.7 358 71.8
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 9.3e-140 500.7 363 71.1
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.1e-139 499.6 363 70.0
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 1.0e-138 497.3 361 71.5
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.7e-138 496.5 359 70.5
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 8.7e-138 494.2 361 70.6
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 8.7e-138 494.2 359 71.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 8.7e-138 494.2 359 71.0
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.9e-137 493.0 356 71.6
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 2.5e-137 492.7 322 73.6
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 2.5e-137 492.7 357 69.5
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 5.6e-137 491.5 352 70.7
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 5.6e-137 491.5 362 68.2
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.6e-136 490.0 333 71.8
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.6e-136 488.8 361 67.3
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.6e-136 488.8 361 68.1
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 8.1e-136 487.6 347 69.7
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.4e-135 486.9 308 76.0
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.1e-135 485.7 363 68.6
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 5.3e-135 485.0 311 74.3
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 9.0e-135 484.2 347 70.0
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.0e-134 483.0 308 77.6
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.6e-134 482.6 338 71.0
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 9.9e-134 480.7 382 65.2
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.7e-133 479.9 308 76.9
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.7e-133 479.9 321 72.0
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 2.2e-133 479.6 363 68.6
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 2.2e-133 479.6 326 72.4
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 2.2e-133 479.6 358 69.0
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.8e-133 478.8 357 70.3
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 6.4e-133 478.0 308 76.3
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 9.3e-132 474.2 362 68.0
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 2.7e-131 472.6 349 69.6
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 6.0e-131 471.5 338 71.3
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 6.0e-131 471.5 312 73.4
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.0e-130 470.7 308 75.6
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.0e-130 470.7 374 65.5
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.3e-130 469.5 358 67.6
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 2.3e-130 469.5 364 66.2
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 3.0e-130 469.2 354 67.2
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 3.9e-130 468.8 368 64.9
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 6.7e-130 468.0 299 75.9
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.1e-129 467.2 299 75.6
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 1.1e-129 467.2 364 65.1
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.1e-129 467.2 297 77.8
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.9e-129 466.5 359 66.3
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.5e-129 466.1 298 76.5
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.3e-129 465.7 306 73.9
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 3.3e-129 465.7 298 75.2
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 5.6e-129 464.9 318 73.0
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 5.6e-129 464.9 297 74.7
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 7.4e-129 464.5 316 73.7
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 7.4e-129 464.5 307 74.6
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 9.6e-129 464.2 326 71.2
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 9.6e-129 464.2 299 75.9
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.6e-128 463.4 315 72.7
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.6e-128 463.4 341 68.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.6e-128 463.4 302 74.5
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.8e-128 461.8 317 72.9
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 6.2e-128 461.5 311 73.0
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 4.0e-127 458.8 303 72.6
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.8e-126 454.9 361 63.7
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 1.7e-125 453.4 318 71.7
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.7e-125 453.4 359 66.9
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 4.9e-125 451.8 328 70.4
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 7.1e-124 448.0 336 67.9
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 7.1e-124 448.0 300 73.3
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 9.3e-124 447.6 381 62.2
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 2.1e-123 446.4 304 72.4
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.0e-122 444.1 259 81.5
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 2.3e-122 443.0 341 65.7
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 2.3e-122 443.0 305 71.8
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 4.3e-121 438.7 306 70.3
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 5.3e-119 431.8 306 70.9
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.3e-117 427.2 311 69.5
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 3.8e-117 425.6 330 67.0
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 4.3e-113 412.1 310 67.4
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.6e-112 410.2 308 67.5
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 6.3e-112 408.3 326 64.4
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.8e-111 406.8 226 83.2
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.0e-109 401.0 361 58.7
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.2e-109 399.8 356 59.0
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 5.5e-108 395.2 299 68.9
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.1e-107 393.3 314 63.4
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 4.3e-105 385.6 361 58.2
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.8e-103 380.2 271 66.8
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.1e-103 379.0 267 68.5
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.5e-102 377.1 254 70.5
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.7e-99 366.3 269 67.7
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.3e-96 357.5 293 61.8
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 2.2e-96 356.7 231 71.0
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.1e-95 354.4 323 58.8
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 8.2e-88 328.2 246 65.0
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 8.5e-85 318.2 363 52.1
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.4e-82 310.8 287 58.9
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.2e-81 307.8 286 59.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.6e-78 297.4 240 64.2
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 2.0e-73 280.4 196 71.9
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 5.4e-71 272.3 214 60.3
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.0e-71 271.9 284 48.6
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.2e-68 263.1 240 60.0
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.9e-62 242.3 200 57.5
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 7.8e-62 241.9 199 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 5.0e-61 239.2 200 56.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.5e-60 237.7 220 55.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 3.3e-60 236.5 190 58.4
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 4.4e-57 226.1 195 55.9
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.2e-56 223.8 355 41.1
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.9e-52 210.7 213 49.8
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.7e-48 197.6 293 43.3
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 8.3e-48 195.3 111 82.9
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.2e-40 170.6 219 49.8
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.4e-39 167.9 110 70.9
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.4e-39 167.2 160 53.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 7.3e-36 155.6 101 69.3
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.0e-33 147.5 198 45.5
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.9e-28 131.0 68 85.3
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 9.6e-28 128.6 108 60.2
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 3.8e-24 116.7 115 57.4
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.4e-18 98.2 101 55.4
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 3.1e-18 97.1 124 47.6
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 3.4e-17 93.6 65 61.5
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 6.4e-16 89.4 96 53.1
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.8e-13 81.3 50 74.0
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 6.7e-13 79.3 81 49.4
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 8.7e-13 79.0 37 89.2
RcHm_v2.0_Chr4g0397091 Rosa chinensis HOM05D001659 ORTHO05D001659 1.1e-12 78.6 189 29.6
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 8.1e-11 72.4 185 29.2
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 5.3e-10 69.7 181 28.2
CAN.G1731.2 Capsicum annuum HOM05D001659 ORTHO05D001659 2.6e-09 67.4 177 29.4
Lj4g0002004 Lotus japonicus HOM05D001659 ORTHO05D001659 2.6e-09 67.4 185 30.8
Solyc08g005550.4 Solanum lycopersicum HOM05D001659 ORTHO05D001659 5.8e-09 66.2 182 29.1
PGSC0003DMG400018484 Solanum tuberosum HOM05D001659 ORTHO05D001659 9.9e-09 65.5 189 27.5
Sopen08g001570 Solanum pennellii HOM05D001659 ORTHO05D001659 1.3e-08 65.1 183 29.5
THA.LOC104814432 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 1.3e-08 65.1 189 28.0
arahy.Tifrunner.gnm1.ann1.R33HCR Arachis hypogaea HOM05D001659 ORTHO05D001659 1.7e-08 64.7 147 29.9
MSTRG.1764 Avicennia marina HOM05D001659 ORTHO05D001659 6.4e-08 62.8 177 28.8
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 6.4e-08 62.8 71 50.7
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.7e-06 57.4 53 56.6
Mapoly0016s0007 Marchantia polymorpha HOM05D001659 ORTHO05D001659 3.5e-06 57.0 156 25.0
CAN.G107.18 Capsicum annuum HOM05D001659 ORTHO05D001659 6.0e-06 56.2 136 32.4
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 6.0e-06 56.2 40 55.0


User provided reference genes

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