Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.7e-118 429.5 237 100.0
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 4.8e-113 411.4 237 95.4
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.3e-107 393.3 237 91.1
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.7e-84 315.1 236 78.4
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.8e-81 305.8 233 77.3
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.1e-80 302.0 240 77.9
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.4e-59 233.8 208 64.9
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 3.4e-58 229.2 233 60.1
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 9.8e-58 227.6 207 64.7
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.3e-57 227.3 215 62.8
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.3e-57 224.9 205 63.9
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 6.3e-57 224.9 199 66.8
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.1e-56 224.2 210 62.4
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.7e-55 219.5 192 65.1
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 3.5e-55 219.2 190 66.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 5.9e-55 218.4 212 59.4
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 5.9e-55 218.4 195 61.5
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 6.6e-54 214.9 227 58.1
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.6e-54 214.5 203 62.6
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.9e-53 213.4 200 62.0
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 4.2e-53 212.2 216 59.3
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 4.2e-53 212.2 189 65.6
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 9.5e-53 211.1 195 64.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 1.6e-52 210.3 181 65.7
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 2.8e-52 209.5 194 61.9
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.6e-52 209.1 199 62.8
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 4.7e-52 208.8 182 66.5
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 6.1e-52 208.4 233 54.9
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 8.0e-52 208.0 206 61.2
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.0e-51 207.6 233 52.8
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 2.3e-51 206.5 200 62.0
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 3.0e-51 206.1 192 62.5
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.0e-51 205.7 200 61.5
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.2e-50 204.1 194 61.3
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.0e-50 203.4 271 49.4
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 2.0e-50 203.4 235 54.0
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.4e-50 202.6 204 59.3
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 9.8e-50 201.1 190 59.5
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 9.8e-50 201.1 235 55.3
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.2e-49 199.9 192 61.5
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 3.7e-49 199.1 187 64.2
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 6.3e-49 198.4 219 55.3
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.1e-48 197.6 160 71.2
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.1e-48 197.6 187 57.2
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.4e-48 197.2 187 58.8
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.8e-48 196.8 236 55.1
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.8e-48 196.8 187 58.8
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.8e-48 196.8 207 58.9
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.4e-48 196.4 181 60.2
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.1e-48 195.7 243 48.6
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 5.4e-48 195.3 198 58.1
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.7e-47 193.0 202 56.4
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 4.5e-47 192.2 204 57.4
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.0e-46 191.0 224 51.3
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.3e-46 190.7 198 57.1
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 1.7e-46 190.3 189 59.8
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.9e-46 189.5 217 57.1
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.9e-46 189.5 198 57.1
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 3.9e-46 189.1 209 56.0
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 6.6e-46 188.3 220 50.5
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.6e-46 188.3 198 57.1
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.6e-46 188.3 190 54.2
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 8.6e-46 188.0 203 59.6
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-45 187.6 188 54.8
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.9e-45 186.8 198 56.6
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 1.9e-45 186.8 183 55.7
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 3.3e-45 186.0 198 57.1
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 3.3e-45 186.0 211 51.7
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 3.3e-45 186.0 226 50.9
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 9.5e-45 184.5 210 51.4
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 9.5e-45 184.5 214 52.3
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.2e-44 184.1 200 56.5
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 1.6e-44 183.7 187 54.0
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 2.8e-44 183.0 186 56.5
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 3.6e-44 182.6 198 54.5
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 6.1e-44 181.8 229 53.3
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.0e-43 181.0 216 52.8
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 5.2e-43 178.7 191 52.4
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 5.8e-42 175.3 232 50.4
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 5.8e-42 175.3 214 49.1
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 7.5e-42 174.9 191 53.4
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.3e-41 174.1 224 47.8
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 2.2e-41 173.3 145 68.3
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 2.2e-41 173.3 222 47.7
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.4e-40 170.6 199 48.7
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.9e-40 170.2 173 56.1
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 4.6e-39 165.6 221 48.4
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 7.8e-39 164.9 216 47.7
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.3e-38 164.1 221 47.1
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 3.9e-38 162.5 214 48.6
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 5.0e-38 162.2 191 50.8
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 6.6e-38 161.8 204 50.0
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 8.6e-38 161.4 214 48.6
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.1e-37 161.0 216 46.8
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 3.3e-37 159.5 204 49.0
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 4.3e-37 159.1 234 47.0
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.6e-36 157.1 192 50.0
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 3.6e-36 156.0 229 46.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 6.2e-36 155.2 201 49.3
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.8e-35 153.7 171 50.3
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 2.3e-35 153.3 231 46.8
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 2.3e-35 153.3 231 46.8
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 2.3e-35 153.3 199 49.2
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 8.9e-35 151.4 167 52.7
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 8.9e-35 151.4 221 46.2
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.2e-34 151.0 199 47.2
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-34 150.6 223 46.2
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 7.5e-34 148.3 214 43.9
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 2.2e-33 146.7 190 50.0
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 3.7e-33 146.0 162 52.5
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 3.7e-33 146.0 199 45.2
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 4.9e-33 145.6 174 50.0
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 8.3e-33 144.8 223 46.2
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.9e-32 143.7 104 79.8
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 7.8e-31 138.3 118 65.3
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 7.8e-31 138.3 94 83.0
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 5.1e-30 135.6 222 42.3
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.1e-29 134.4 190 50.5
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.5e-29 133.3 272 39.0
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 9.5e-29 131.3 232 44.4
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 8.1e-28 128.3 205 44.9
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 8.1e-28 128.3 205 44.9
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 8.1e-28 128.3 205 44.9
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 8.1e-28 128.3 221 42.5
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 4.0e-27 125.9 212 42.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 3.4e-26 122.9 183 46.4
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 7.6e-26 121.7 134 56.0
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 4.9e-25 119.0 224 38.4
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 4.1e-24 115.9 220 35.0
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 3.5e-23 112.8 189 42.3
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 6.0e-23 112.1 202 40.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 7.8e-23 111.7 234 40.2
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 9.6e-21 104.8 102 59.8
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 8.1e-20 101.7 172 34.9
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 9.9e-18 94.7 105 54.3
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 1.7e-17 94.0 110 51.8
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.9e-17 93.2 105 53.3
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.9e-16 90.5 156 41.0
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.3e-14 84.3 82 67.1
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.1e-13 81.3 141 45.4
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 9.6e-13 78.2 82 57.3
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.6e-12 77.4 149 33.6
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 2.8e-12 76.6 95 45.3
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 1.8e-11 73.9 114 43.9
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 5.8e-10 68.9 48 68.8
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.2e-08 62.8 77 45.5
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 5.4e-08 62.4 56 55.4
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 5.4e-08 62.4 98 38.8
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 1.3e-06 57.8 113 36.3
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 8.7e-06 55.1 90 36.7


User provided reference genes

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