Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 1.1e-121 439.9 215 100.0
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 2.0e-81 306.2 152 98.0
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 3.3e-81 305.4 152 98.0
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 4.1e-79 298.5 152 96.1
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.7e-75 285.8 151 92.1
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 8.8e-74 280.8 152 90.1
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.2e-73 280.4 151 90.7
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 9.8e-73 277.3 151 89.4
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 2.9e-69 265.8 152 84.9
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 1.4e-63 246.9 151 78.8
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 3.1e-63 245.7 152 79.6
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 5.9e-62 241.5 152 78.3
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 2.3e-61 239.6 151 77.5
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 2.9e-61 239.2 151 78.1
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 5.0e-61 238.4 151 75.5
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 6.6e-61 238.0 151 77.5
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 6.6e-61 238.0 151 76.8
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 8.6e-61 237.7 152 76.3
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 3.3e-60 235.7 151 74.8
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 7.3e-60 234.6 151 73.5
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 4.7e-59 231.9 151 74.8
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 6.1e-59 231.5 151 73.5
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 8.0e-59 231.1 151 73.5
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 1.4e-58 230.3 151 72.2
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 1.4e-58 230.3 151 74.8
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.8e-58 229.9 151 72.2
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 2.3e-58 229.6 152 71.1
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 2.3e-58 229.6 151 75.5
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 2.3e-58 229.6 151 72.8
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 2.3e-58 229.6 151 72.8
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.0e-58 229.2 152 77.0
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 4.0e-58 228.8 153 73.2
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 4.0e-58 228.8 151 74.2
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 5.2e-58 228.4 151 70.2
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 6.8e-58 228.0 152 70.4
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 8.9e-58 227.6 151 73.5
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 8.9e-58 227.6 151 74.8
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 8.9e-58 227.6 151 72.8
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 1.5e-57 226.9 152 69.7
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 1.5e-57 226.9 152 69.7
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 2.0e-57 226.5 151 70.9
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 3.4e-57 225.7 151 71.5
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 4.4e-57 225.3 152 69.7
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 9.8e-57 224.2 151 71.5
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 1.7e-56 223.4 191 62.3
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 2.2e-56 223.0 151 72.2
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 3.7e-56 222.2 151 70.2
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 3.7e-56 222.2 152 69.1
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 3.7e-56 222.2 151 68.9
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 4.9e-56 221.9 152 69.7
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 4.9e-56 221.9 152 69.7
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 6.4e-56 221.5 152 69.7
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 8.3e-56 221.1 151 71.5
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 8.3e-56 221.1 152 69.7
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 8.3e-56 221.1 150 70.0
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 4.1e-55 218.8 152 69.1
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 5.4e-55 218.4 151 68.9
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 1.2e-54 217.2 152 67.1
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 1.2e-54 217.2 152 68.4
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 1.2e-54 217.2 150 67.3
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 2.0e-54 216.5 150 68.0
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 2.7e-54 216.1 152 68.4
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 4.6e-54 215.3 150 68.0
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 5.9e-54 214.9 150 66.7
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 1.7e-53 213.4 185 59.5
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 5.0e-53 211.8 219 54.3
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 8.6e-53 211.1 151 66.2
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.5e-52 210.3 151 70.9
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 1.9e-52 209.9 152 68.4
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 3.3e-52 209.1 151 68.9
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 3.3e-52 209.1 151 70.2
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 4.3e-52 208.8 151 67.5
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 5.6e-52 208.4 151 67.5
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 8.0e-51 204.5 149 67.1
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 8.0e-51 204.5 149 67.1
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 1.0e-50 204.1 153 66.7
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.8e-50 203.4 151 64.2
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 3.1e-50 202.6 131 76.3
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 3.1e-50 202.6 151 63.6
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 4.0e-50 202.2 151 63.6
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 6.8e-50 201.4 151 62.9
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 8.9e-50 201.1 151 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 3.4e-49 199.1 151 62.9
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 3.4e-49 199.1 152 63.8
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 7.5e-49 198.0 151 62.9
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 1.7e-48 196.8 155 61.9
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 2.4e-47 193.0 168 58.3
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 3.5e-46 189.1 150 62.0
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 4.6e-46 188.7 154 63.0
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 3.0e-45 186.0 114 74.6
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 6.6e-45 184.9 113 74.3
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 1.1e-44 184.1 118 71.2
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 9.8e-41 171.0 113 68.1
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 7.1e-39 164.9 114 66.7
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 4.6e-38 162.2 106 74.5
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 2.5e-36 156.4 89 77.5
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.6e-35 153.7 108 70.4
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 3.6e-35 152.5 91 76.9
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.0e-33 146.7 151 55.6
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 5.4e-31 138.7 75 90.7
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 7.6e-25 118.2 63 92.1
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 3.3e-20 102.8 153 40.5
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 7.9e-14 81.6 140 40.7
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 5.6e-12 75.5 53 66.0
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.3e-11 74.3 79 60.8
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 1.5e-09 67.4 44 59.1


User provided reference genes

Program Settings