Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 0.0e+00 1308.9 671 100.0
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 0.0e+00 1300.4 671 99.1
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 0.0e+00 1153.3 670 88.5
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 0.0e+00 1117.1 649 87.7
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 3.4e-297 1024.6 648 81.3
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.2e-291 1006.1 664 80.1
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 3.9e-277 958.0 513 96.3
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 1.2e-275 953.0 669 70.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.7e-270 935.3 647 70.3
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.5e-268 928.7 672 68.6
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 4.7e-267 924.5 672 68.3
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.2e-264 915.6 669 67.6
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 3.0e-261 905.2 660 69.1
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.5e-260 902.9 669 67.1
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.5e-260 902.1 665 67.5
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 4.3e-260 901.4 672 67.6
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 2.8e-259 898.7 672 65.8
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 1.2e-257 893.3 665 67.1
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.6e-257 892.1 665 66.5
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 9.9e-257 890.2 669 65.6
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.3e-256 889.8 669 67.6
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.2e-256 889.0 669 65.6
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 3.8e-256 888.3 670 67.5
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 3.8e-256 888.3 644 68.9
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 9.3e-255 883.6 665 65.9
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.2e-254 883.2 662 65.9
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.6e-254 882.9 660 66.4
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.1e-254 882.5 670 66.9
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.9e-253 878.2 672 65.0
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.1e-252 876.7 670 64.8
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.9e-252 875.9 656 65.4
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 9.6e-252 873.6 723 61.7
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 9.6e-252 873.6 668 64.4
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.8e-251 872.1 667 66.4
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.1e-250 870.2 665 65.4
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 4.0e-250 868.2 690 63.0
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.5e-249 866.3 665 64.7
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 2.6e-249 865.5 664 64.3
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 4.5e-249 864.8 660 66.2
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.7e-248 862.8 668 65.3
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 2.4e-247 859.0 671 65.6
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 3.2e-247 858.6 642 66.2
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 3.9e-245 851.7 668 63.6
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.9e-245 851.7 671 63.2
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 4.3e-244 848.2 660 66.5
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 3.7e-243 845.1 642 64.6
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 3.7e-243 845.1 663 64.3
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 1.8e-242 842.8 669 63.1
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 6.9e-242 840.9 651 64.1
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 6.9e-242 840.9 647 64.0
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.2e-241 840.1 738 59.5
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.5e-241 839.7 677 62.2
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.9e-240 835.5 664 64.0
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 3.8e-240 835.1 663 62.0
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 4.9e-240 834.7 693 61.3
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 8.4e-240 833.9 685 61.6
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 9.3e-239 830.5 655 62.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.1e-238 829.3 665 62.0
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 2.7e-238 828.9 665 61.8
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 7.9e-238 827.4 665 62.3
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 2.3e-237 825.9 663 61.5
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 3.9e-237 825.1 670 61.6
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 3.9e-237 825.1 631 67.0
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 3.9e-237 825.1 681 62.0
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 5.1e-237 824.7 654 63.9
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 2.8e-235 818.9 670 61.8
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 1.1e-234 817.0 666 62.9
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 9.0e-234 813.9 671 60.7
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 9.0e-234 813.9 572 71.0
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 1.7e-232 809.7 634 62.8
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 5.0e-232 808.1 667 60.6
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.1e-231 807.0 648 64.8
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 1.4e-231 806.6 668 61.2
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 3.2e-231 805.4 668 61.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 9.4e-231 803.9 580 68.8
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 1.4e-229 800.0 721 57.1
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 2.3e-229 799.3 672 60.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 6.7e-229 797.7 692 58.2
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 6.3e-227 791.2 638 63.3
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.3e-226 788.1 668 61.8
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.5e-225 786.6 740 55.8
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 5.0e-224 781.6 672 59.4
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 4.4e-220 768.5 647 60.9
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.1e-218 763.8 574 66.9
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.6e-214 750.0 699 56.8
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.0e-213 747.3 704 56.4
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 8.2e-211 737.6 577 63.8
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.6e-209 733.4 668 57.2
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 3.5e-209 732.3 694 56.1
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.2e-208 729.6 557 64.3
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.1e-207 727.2 668 57.0
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 8.0e-206 721.1 651 56.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 3.0e-205 719.2 670 54.9
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 6.1e-198 694.9 676 56.2
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.7e-196 688.3 665 56.1
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.8e-194 683.3 668 54.9
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.7e-184 650.2 624 55.4
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 3.7e-179 632.5 494 65.4
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.1e-173 614.4 594 55.2
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 6.4e-163 578.6 664 46.7
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 3.0e-160 569.7 647 47.4
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 4.3e-143 512.7 351 70.4
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.2e-139 500.4 679 43.0
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 3.7e-126 456.4 560 45.0
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 2.5e-114 417.2 308 67.9
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.8e-96 357.8 648 38.4
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 8.8e-88 328.9 298 56.4
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 8.5e-83 312.4 355 51.3
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 3.5e-76 290.4 659 32.3
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 7.5e-71 272.7 240 60.4
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 3.6e-65 253.8 330 43.9
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 6.2e-49 199.9 179 53.1
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 5.8e-47 193.4 327 35.5
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.3e-43 182.2 754 27.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.2e-38 164.9 309 33.0
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 8.4e-30 136.3 113 60.2
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 9.3e-29 132.9 103 59.2
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 2.3e-27 128.3 187 41.7
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.8e-24 118.6 110 51.8
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 9.9e-23 112.8 115 53.9
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 3.9e-19 100.9 83 56.6
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 6.2e-17 93.6 102 48.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.2e-17 93.6 93 50.5
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.5e-14 83.6 68 58.8
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 7.9e-12 76.6 65 53.8
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 3.9e-11 74.3 50 70.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.1e-11 73.9 47 74.5
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 8.7e-11 73.2 64 59.4
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.5e-10 72.4 42 73.8
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 1.9e-10 72.0 62 58.1
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 1.9e-10 72.0 62 58.1
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.3e-10 71.2 42 73.8
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.6e-10 69.7 47 72.3
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 2.8e-09 68.2 42 76.2
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 1.4e-08 65.9 35 82.9
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 5.0e-06 57.4 36 63.9


User provided reference genes

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