Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1461.0 740 100.0
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1454.1 740 99.3
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1443.7 740 98.5
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1389.4 745 93.7
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1379.4 747 92.8
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1377.8 746 93.2
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1291.9 746 85.4
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1290.0 747 84.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 745 85.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1280.4 745 84.2
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1280.0 746 85.5
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1280.0 748 84.4
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1278.5 746 86.1
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 744 85.5
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1275.0 778 82.5
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1274.6 741 85.2
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 748 83.6
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 749 83.6
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1264.6 741 83.5
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1263.4 748 84.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 748 84.1
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 749 82.9
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 740 83.4
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 750 83.2
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 741 83.4
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 747 82.6
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1256.9 742 83.4
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 747 83.3
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 748 82.8
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 744 84.3
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 746 83.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 742 83.7
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 747 82.5
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 749 83.4
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 747 82.6
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 736 84.0
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 746 83.9
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 743 83.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 748 82.1
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 748 82.0
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 741 83.4
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 748 82.0
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1248.0 748 82.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 747 83.0
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 742 82.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 748 83.0
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 751 82.6
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 742 82.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 742 83.2
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 748 81.8
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 746 82.0
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 664 93.7
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 800 78.4
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 743 82.9
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 742 83.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 742 82.9
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 740 83.4
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 742 81.9
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1238.4 748 82.4
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 746 82.2
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 742 82.2
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1234.9 746 81.8
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 745 82.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1233.8 742 82.7
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 747 81.8
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 746 81.0
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1228.4 748 81.7
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 748 83.0
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 716 84.1
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 746 80.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 741 81.4
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 739 81.7
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 745 80.3
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 749 80.5
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 759 80.4
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 738 80.9
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 759 80.0
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 751 80.3
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 751 80.6
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 746 81.6
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 748 80.5
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 692 84.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 745 79.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 745 79.9
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 745 79.7
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1207.6 745 79.7
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 745 79.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 745 79.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 740 80.4
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 744 79.7
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 844 72.9
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 746 79.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 745 79.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 747 78.7
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 746 80.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1196.8 746 79.1
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 723 81.6
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 745 78.8
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 745 79.1
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 751 78.6
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 746 78.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 656 87.7
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 735 78.4
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 779 75.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1169.5 747 78.6
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1165.2 738 77.8
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1157.9 750 77.6
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1147.9 748 76.7
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 656 83.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 656 82.9
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1129.4 746 76.8
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1126.3 741 75.0
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1113.6 658 83.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1101.7 738 74.0
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1101.3 731 75.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1093.2 1058 56.8
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 6.1e-308 1060.4 747 73.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.0e-306 1055.4 623 83.8
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.3e-281 970.3 676 69.8
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.3e-281 970.3 676 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.2e-280 968.4 677 69.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 3.2e-280 968.4 679 67.0
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.1e-280 968.0 676 69.7
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.3e-278 963.0 674 69.1
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 8.6e-278 960.3 676 69.2
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 2.9e-257 892.1 593 74.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-253 879.8 593 74.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.3e-249 866.7 678 61.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.9e-232 809.7 679 59.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 1.1e-224 783.9 692 57.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.5e-216 756.1 677 58.5
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.1e-207 724.9 676 60.1
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.1e-199 699.9 676 53.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.2e-173 614.4 706 46.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.0e-161 574.7 361 76.2
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.0e-161 572.4 322 89.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.9e-156 555.8 305 86.6
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.1e-142 511.5 297 87.2
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-131 474.9 301 79.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 7.1e-131 472.2 305 75.7
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 5.6e-120 436.0 292 72.3
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.5e-109 399.8 237 82.3
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.7e-98 364.0 241 75.1
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.0e-96 357.8 296 65.2
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.4e-94 350.9 295 63.1
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 7.7e-93 345.9 219 78.1
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.5e-88 331.6 225 76.0
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 3.2e-75 287.3 172 79.1
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 5.9e-69 266.5 368 40.5
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 7.2e-67 259.6 394 44.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.8e-66 257.7 126 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.1e-62 245.7 144 81.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.9e-59 235.0 260 52.7
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.3e-59 234.2 114 95.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.4e-49 202.2 137 75.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 7.1e-46 189.9 146 67.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.2e-42 176.8 144 64.6
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 3.2e-38 164.5 102 69.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 7.1e-38 163.3 122 69.7
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 9.6e-35 152.9 91 79.1
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 2.4e-33 148.3 141 51.8
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.9e-31 140.6 116 67.2
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.2e-30 137.5 83 80.7
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.9e-27 128.6 105 61.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 7.3e-27 126.7 134 53.7
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 4.8e-26 124.0 61 93.4
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.7e-23 115.5 220 30.9
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.9e-23 114.8 99 61.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.4e-22 112.5 137 53.3
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.1e-14 83.6 56 73.2
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 3.3e-11 74.7 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.1e-10 72.0 38 89.5


User provided reference genes

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