Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 0.0e+00 1276.9 646 100.0
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 0.0e+00 1239.9 646 97.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 0.0e+00 1176.4 650 92.6
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.7e-304 1048.1 654 83.8
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.2e-299 1032.7 696 78.9
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 5.8e-270 934.1 655 76.0
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 4.5e-238 828.2 653 67.2
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.2e-236 822.0 652 66.4
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.6e-235 819.7 657 66.1
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 3.5e-235 818.5 542 80.3
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 6.7e-234 814.3 656 64.6
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.9e-233 812.8 652 66.0
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.5e-230 801.6 658 65.3
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.9e-229 798.9 662 65.6
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 4.9e-229 798.1 649 65.0
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.4e-228 796.6 677 63.2
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.9e-228 796.2 677 63.5
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 3.2e-228 795.4 659 65.3
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.2e-228 795.0 659 64.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 2.7e-227 792.3 661 64.4
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 3.9e-226 788.5 657 65.6
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.6e-224 783.1 658 63.7
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 4.1e-223 778.5 655 64.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 6.9e-223 777.7 637 65.6
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 2.0e-222 776.2 654 61.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.3e-221 773.5 660 63.6
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.4e-220 770.0 651 64.1
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 2.5e-220 769.2 655 64.4
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 3.5e-219 765.4 645 63.3
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 7.9e-219 764.2 668 62.1
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.0e-218 763.8 662 62.8
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 3.0e-218 762.3 644 63.8
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.5e-217 760.0 655 63.4
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.9e-217 759.6 643 62.4
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.7e-217 758.1 672 60.6
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 9.7e-217 757.3 638 62.1
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 2.2e-216 756.1 658 63.5
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 9.0e-215 750.7 645 62.2
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 9.0e-215 750.7 661 61.3
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.2e-214 750.4 653 61.9
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.5e-214 750.0 657 60.9
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.7e-214 747.7 656 62.8
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.0e-213 747.3 659 61.8
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.0e-213 747.3 659 61.8
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 3.8e-213 745.3 658 61.2
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 6.5e-213 744.6 639 63.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.5e-212 742.7 655 60.3
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 5.5e-212 741.5 672 60.7
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.2e-211 740.3 650 62.9
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.6e-211 738.4 651 61.0
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 7.9e-211 737.6 633 62.1
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.0e-210 737.3 658 60.9
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 3.0e-210 735.7 633 62.2
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 2.0e-209 733.0 659 60.4
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 9.7e-209 730.7 661 59.3
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.3e-208 730.3 640 61.6
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.7e-208 729.9 657 59.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 9.1e-207 724.2 620 63.5
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.9e-205 719.2 669 58.6
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 3.8e-205 718.8 662 59.2
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 5.0e-205 718.4 647 59.0
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 2.7e-203 712.6 647 58.4
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 7.4e-201 704.5 646 60.2
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 8.2e-200 701.0 649 58.9
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.2e-198 697.2 658 58.2
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.6e-198 696.0 601 61.7
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 7.7e-198 694.5 660 58.8
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.7e-197 693.3 660 58.8
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.2e-197 693.0 676 58.1
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.9e-197 692.6 645 59.1
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 6.5e-197 691.4 665 59.1
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.5e-196 689.5 646 58.2
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 4.2e-196 688.7 647 58.3
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.2e-196 688.7 645 58.9
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.0e-194 684.1 648 58.0
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 4.0e-194 682.2 645 57.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 5.2e-194 681.8 645 58.6
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 6.7e-194 681.4 683 55.1
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 4.4e-193 678.7 659 57.7
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 2.2e-192 676.4 654 55.4
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-190 670.2 587 62.2
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.2e-188 661.4 571 62.7
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.8e-186 656.8 651 55.3
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 6.3e-184 648.3 648 53.9
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.7e-182 642.9 639 56.3
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 4.5e-182 642.1 488 68.0
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.1e-179 633.3 533 63.6
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 7.5e-177 624.8 538 60.8
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.3e-172 609.4 502 63.9
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 5.2e-170 602.1 690 50.9
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 3.4e-169 599.4 490 64.3
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 3.7e-168 595.9 651 51.3
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 3.7e-168 595.9 656 50.6
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.5e-156 557.4 700 45.7
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.0e-154 549.3 598 53.3
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.0e-149 533.1 544 54.8
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.7e-141 507.3 485 57.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.3e-132 476.5 637 44.4
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 5.3e-130 469.2 512 53.3
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.4e-127 460.3 444 58.3
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.1e-116 424.9 446 59.4
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 2.8e-115 420.2 748 36.5
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.0e-109 400.2 687 38.3
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.6e-102 377.9 384 59.1
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 9.0e-98 362.1 294 70.1
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 6.5e-96 355.9 283 64.3
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.5e-95 352.8 584 40.2
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 2.1e-94 350.9 344 54.9
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 7.9e-94 349.0 340 58.2
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 9.7e-92 342.0 294 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 9.1e-90 335.5 639 36.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.0e-81 307.8 206 77.7
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.0e-80 305.4 290 61.4
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 6.1e-78 296.2 495 38.2
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-69 268.5 326 48.2
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.6e-62 243.8 380 40.8
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 4.0e-61 240.4 175 70.3
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.7e-56 224.9 195 63.1
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.3e-51 208.8 388 42.5
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.6e-47 193.4 149 62.4
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.2e-43 181.4 155 61.9
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 6.0e-41 173.3 678 29.6
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 5.0e-40 170.2 327 33.0
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 9.2e-34 149.4 106 64.2
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 4.0e-29 134.0 179 44.7
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-18 99.4 127 47.2
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 7.8e-17 93.2 75 58.7
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.0e-16 91.3 61 75.4
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.5e-15 88.2 95 46.3
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 9.6e-15 86.3 165 38.2
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 2.1e-14 85.1 66 60.6
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.5e-12 79.0 93 48.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 2.0e-12 78.6 114 44.7
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 9.9e-12 76.3 51 76.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.7e-11 75.5 56 66.1
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 2.2e-11 75.1 114 42.1


User provided reference genes

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