Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 2.8e-68 261.9 142 100.0
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 7.6e-66 253.8 142 94.4
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 3.5e-63 245.0 142 95.8
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 5.7e-53 211.1 142 76.8
Nitab4.5_0003888g0010 Nicotiana tabacum HOM05D013332 ORTHO05D004477 3.2e-32 142.1 103 74.8
Nitab4.5_0000241g0190 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.1e-31 139.4 103 73.8
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 3.6e-31 138.7 142 57.7
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.4e-30 136.7 139 60.4
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.0e-29 132.9 130 61.5
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.5e-26 121.7 146 54.8
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.0e-22 110.5 136 50.7
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 2.2e-20 102.8 128 51.6
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 5.0e-17 91.7 133 47.4
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.8e-15 85.9 145 42.1
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 6.1e-15 84.7 140 43.6
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 1.0e-14 84.0 143 41.3
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.0e-14 84.0 142 42.3
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.8e-14 83.2 150 43.3
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 1.3e-12 77.0 148 41.9
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.7e-12 76.6 142 38.0
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 2.2e-12 76.3 138 39.9
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.2e-12 76.3 141 39.0
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.2e-12 76.3 148 41.2
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.7e-12 75.5 142 37.3
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 4.9e-12 75.1 144 39.6
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 4.9e-12 75.1 142 37.3
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 4.9e-12 75.1 161 39.1
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 8.3e-12 74.3 151 38.4
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 1.1e-11 73.9 148 36.5
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.4e-11 73.6 142 38.0
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 1.8e-11 73.2 148 38.5
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 1.8e-11 73.2 148 38.5
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 2.4e-11 72.8 146 39.7
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.4e-11 72.8 159 39.0
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 3.1e-11 72.4 146 42.5
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 5.4e-11 71.6 144 37.5
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 7.0e-11 71.2 160 37.5
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 7.0e-11 71.2 141 34.8
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.2e-10 70.5 135 35.6
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.2e-10 70.5 159 39.0
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 2.0e-10 69.7 137 42.3
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 2.7e-10 69.3 140 42.9
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 2.7e-10 69.3 121 38.8
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 3.5e-10 68.9 155 34.8
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.5e-10 68.6 159 38.4
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 5.9e-10 68.2 144 36.1
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 5.9e-10 68.2 146 33.6
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 1.0e-09 67.4 139 38.8
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.3e-09 67.0 159 35.2
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.7e-09 66.6 144 38.9
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 2.3e-09 66.2 146 36.3
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 2.9e-09 65.9 142 38.7
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.9e-09 65.9 146 39.0
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 2.9e-09 65.9 146 38.4
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 3.8e-09 65.5 142 35.9
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 5.0e-09 65.1 130 35.4
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.6e-09 64.7 142 34.5
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.6e-09 64.7 142 34.5
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.6e-09 64.7 143 34.3
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.6e-09 64.7 143 34.3
SGA_v2.0_scaffold115G32090 Striga asiatica HOM05D010872 ORTHO05D004477 6.6e-09 64.7 113 45.1
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 1.5e-08 63.5 143 35.7
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 1.9e-08 63.2 159 36.5
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.9e-08 63.2 137 34.3
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 1.9e-08 63.2 143 35.7
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 2.5e-08 62.8 140 39.3
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 2.5e-08 62.8 131 38.2
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.5e-08 62.8 147 35.4
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 2.5e-08 62.8 144 34.0
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 2.5e-08 62.8 136 35.3
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.3e-08 62.4 127 37.0
CDE03G0262 Ceratophyllum demersum HOM05D001201 ORTHO05D004477 4.3e-08 62.0 132 33.3
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.3e-08 62.0 147 35.4
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 4.3e-08 62.0 155 34.2
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 4.3e-08 62.0 140 37.9
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 5.6e-08 61.6 137 35.0
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 7.3e-08 61.2 126 35.7
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 9.5e-08 60.8 140 36.4
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 9.5e-08 60.8 145 31.7
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 1.2e-07 60.5 141 34.8
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 1.6e-07 60.1 125 38.4
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.1e-07 59.7 138 33.3
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 2.1e-07 59.7 137 33.6
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.1e-07 59.7 137 38.7
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 2.1e-07 59.7 122 36.9
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.8e-07 59.3 138 32.6
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 3.6e-07 58.9 139 33.1
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 4.7e-07 58.5 141 32.6
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 6.1e-07 58.2 132 39.4
PSO700G0164 Papaver somniferum HOM05D055938 ORTHO05D050202 6.1e-07 58.2 146 33.6
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 6.1e-07 58.2 149 33.6
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 8.0e-07 57.8 153 34.0
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 8.0e-07 57.8 137 39.4
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 8.0e-07 57.8 131 35.9
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 1.0e-06 57.4 148 32.4
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.0e-06 57.4 149 38.3
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.0e-06 57.4 130 36.2
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 1.0e-06 57.4 140 32.9
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.4e-06 57.0 151 31.1
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.4e-06 57.0 136 38.2
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 1.8e-06 56.6 157 31.2
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.8e-06 56.6 143 35.0
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.3e-06 56.2 155 38.1
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 3.0e-06 55.8 136 34.6
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 4.0e-06 55.5 128 35.2
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 4.0e-06 55.5 141 36.9
BolC9t53945H Brassica oleracea HOM05D010563 ORTHO05D012591 5.2e-06 55.1 134 35.1
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 5.2e-06 55.1 133 33.1
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 6.8e-06 54.7 36 63.9
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 8.9e-06 54.3 149 30.9
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 8.9e-06 54.3 145 33.8


User provided reference genes

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