Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 0.0e+00 1450.6 834 100.0
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 0.0e+00 1415.6 834 98.2
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 0.0e+00 1345.9 834 94.0
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 0.0e+00 1134.0 869 78.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 0.0e+00 1118.6 839 81.3
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 0.0e+00 1098.6 846 78.3
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 0.0e+00 1091.3 870 74.0
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.1e-217 760.8 821 61.8
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 6.9e-199 698.4 846 55.2
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 4.5e-198 695.7 838 56.4
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 3.8e-197 692.6 836 57.4
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 4.2e-196 689.1 822 56.2
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 7.1e-196 688.3 822 56.2
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.6e-195 687.2 827 57.0
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.6e-195 687.2 832 56.5
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.1e-195 686.8 828 56.0
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.1e-195 686.8 843 56.3
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 6.7e-194 681.8 833 56.2
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.5e-193 680.6 825 56.5
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 3.3e-193 679.5 879 52.0
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 3.1e-191 672.9 848 55.4
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.2e-190 671.0 847 56.1
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.6e-190 669.8 844 55.8
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.3e-186 657.5 824 54.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.5e-185 654.1 830 53.4
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 2.8e-184 649.8 823 53.8
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 2.8e-184 649.8 842 53.3
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 8.2e-184 648.3 816 54.7
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 2.4e-183 646.7 841 53.4
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.2e-180 636.3 828 53.7
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.6e-179 634.0 891 48.8
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 2.1e-179 633.6 819 52.6
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 6.1e-179 632.1 844 54.9
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.9e-178 629.4 843 53.0
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.9e-177 627.1 837 54.4
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 4.3e-177 625.9 838 52.9
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.7e-177 625.5 824 52.4
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.3e-176 624.4 823 50.3
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 3.7e-176 622.9 844 53.9
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.1e-175 621.3 820 53.2
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 2.4e-175 620.2 809 48.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.1e-175 619.8 820 53.2
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 4.1e-175 619.4 820 52.7
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.3e-175 619.0 816 52.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 9.0e-175 618.2 817 51.3
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 5.9e-174 615.5 823 54.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 4.2e-172 609.4 816 49.9
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 7.2e-172 608.6 840 52.3
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.7e-171 606.7 788 55.1
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 3.0e-170 603.2 842 51.3
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 8.8e-170 601.7 818 51.8
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.3e-169 599.4 827 52.5
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 4.3e-169 599.4 815 50.2
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.7e-169 599.0 802 51.4
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 9.7e-169 598.2 819 52.1
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 9.7e-169 598.2 788 46.7
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.7e-168 597.4 843 51.5
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.7e-168 597.4 843 51.5
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.2e-168 597.0 808 47.9
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 6.3e-168 595.5 812 46.4
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.1e-167 593.2 816 49.9
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 4.1e-167 592.8 830 47.8
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 5.3e-167 592.4 845 50.4
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 6.9e-167 592.0 815 51.5
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 6.9e-167 592.0 821 46.4
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.2e-166 591.3 796 49.4
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.5e-166 590.9 779 52.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.0e-166 590.5 802 52.0
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.7e-165 587.4 838 49.0
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.7e-165 587.4 845 51.0
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 2.2e-165 587.0 839 50.2
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 6.5e-165 585.5 820 51.8
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 2.5e-164 583.6 761 55.3
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 2.7e-163 580.1 683 58.1
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 2.3e-162 577.0 811 47.2
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.5e-161 574.3 830 48.7
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 2.0e-161 573.9 745 54.6
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.0e-161 573.9 832 46.2
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.4e-159 567.8 685 57.1
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.0e-158 563.9 781 51.2
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 6.5e-157 558.9 805 49.4
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.5e-156 557.8 798 51.3
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 1.9e-156 557.4 818 45.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 9.4e-156 555.1 842 43.7
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 9.4e-156 555.1 847 46.5
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 3.6e-155 553.1 825 49.3
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.4e-154 551.2 708 55.6
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 2.6e-153 547.0 840 47.5
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.8e-151 540.8 812 50.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.6e-147 527.7 852 46.6
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 7.5e-145 518.8 804 49.0
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.2e-142 511.5 780 45.0
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.7e-141 507.7 971 42.8
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 2.2e-141 507.3 966 43.0
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.5e-140 502.7 867 44.6
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.6e-139 501.1 495 55.2
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.1e-135 488.4 795 46.7
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 1.8e-135 487.6 795 46.5
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.0e-133 481.9 784 46.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.0e-133 481.9 784 46.7
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.9e-128 463.8 864 42.6
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 3.9e-125 453.4 864 43.4
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 5.8e-121 439.5 910 40.1
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.2e-115 421.8 846 42.7
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.6e-113 414.1 800 44.6
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 2.6e-105 387.5 498 48.0
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.7e-104 384.8 760 44.5
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 8.1e-91 339.3 859 38.0
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.4e-90 337.8 819 36.4
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 5.4e-87 326.6 589 48.0
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 7.9e-70 269.6 252 57.5
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 8.4e-64 249.6 460 37.6
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 2.1e-62 245.0 494 37.0
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.5e-60 238.8 586 32.6
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.3e-59 235.7 492 36.8
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.2e-56 224.9 840 28.3
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.3e-53 214.9 815 31.0
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.3e-40 172.6 676 34.0
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 5.0e-40 170.6 465 33.8
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.0e-37 162.9 197 50.3
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.7e-35 155.6 375 30.4
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 8.0e-30 136.7 188 43.6
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.2e-29 134.0 108 59.3
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.2e-25 122.9 178 44.4
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 2.0e-25 122.1 195 40.5
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 5.5e-23 114.0 228 38.2
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 3.0e-21 108.2 144 45.8
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.5e-15 89.4 120 46.7
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 4.7e-14 84.3 177 33.9
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 1.7e-11 75.9 64 53.1
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 6.4e-11 73.9 67 62.7
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 8.3e-11 73.6 73 56.2
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 1.6e-09 69.3 69 56.5
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 2.7e-09 68.6 299 28.8
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 1.3e-08 66.2 66 59.1
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 1.1e-07 63.2 85 47.1
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 1.9e-07 62.4 117 41.0
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 9.5e-07 60.1 102 41.2
Lj1C955T6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.6e-06 59.3 69 50.7
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 2.1e-06 58.9 47 57.4
MCO02G251 Micromonas commoda HOM05D005855 ORTHO05D006406 8.0e-06 57.0 351 25.4


User provided reference genes

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