Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 6.8e-72 273.9 135 100.0
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.2e-68 263.1 135 97.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-63 246.5 139 90.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 4.1e-53 211.5 147 74.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 2.3e-48 195.7 140 74.3
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.7e-35 152.9 132 60.6
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.9e-32 140.6 130 55.4
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.0e-31 139.4 133 57.1
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 4.4e-31 138.3 131 58.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.3e-30 136.7 126 55.6
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.8e-30 135.2 126 54.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.9e-30 134.8 131 55.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 6.4e-30 134.4 132 55.3
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.1e-29 133.7 135 58.5
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.4e-29 133.3 132 54.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.4e-29 131.3 126 55.6
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.4e-29 131.3 126 54.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 9.3e-29 130.6 131 54.2
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.1e-28 129.4 130 54.6
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.7e-28 129.0 133 52.6
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 3.5e-28 128.6 132 53.0
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 4.6e-28 128.3 133 55.6
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 7.8e-28 127.5 135 51.9
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-27 127.1 133 51.9
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.7e-27 126.3 136 54.4
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.7e-27 126.3 136 52.9
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-27 125.2 139 51.8
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.6e-27 124.4 131 52.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 8.7e-27 124.0 137 52.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.3e-26 122.1 131 52.7
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.3e-26 122.1 141 49.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 5.6e-26 121.3 130 55.4
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.6e-26 121.3 129 48.1
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 7.3e-26 120.9 130 52.3
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 9.6e-26 120.6 128 52.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.3e-25 120.2 132 49.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.6e-25 119.8 134 50.7
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.6e-25 119.8 125 52.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.1e-25 119.4 140 50.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.6e-25 118.6 137 54.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.6e-25 118.6 136 51.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.1e-24 117.1 130 51.5
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.1e-24 117.1 128 51.6
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-24 116.7 129 46.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.8e-24 116.3 127 52.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 3.1e-24 115.5 126 50.0
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.1e-24 115.5 138 53.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.0e-24 115.2 130 46.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 4.0e-24 115.2 133 49.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 5.3e-24 114.8 129 51.9
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.0e-24 114.0 126 50.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.0e-23 112.8 127 52.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.4e-23 112.1 129 48.1
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.8e-23 111.3 126 49.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 7.6e-23 110.9 126 48.4
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 9.9e-23 110.5 124 51.6
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 9.9e-23 110.5 124 50.8
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.2e-22 109.4 130 50.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.2e-22 109.4 126 48.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.2e-22 109.4 134 48.5
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.2e-22 109.4 134 48.5
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-21 107.1 132 49.2
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-21 107.1 132 49.2
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-21 106.7 137 50.4
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-21 106.7 104 53.8
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-21 106.3 132 49.2
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.4e-21 105.9 102 53.9
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.2e-21 105.1 138 46.4
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.3e-21 104.0 138 47.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.1e-20 102.8 130 45.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.7e-20 102.4 152 43.4
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.7e-20 102.4 122 49.2
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 7.9e-20 100.9 143 44.8
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.0e-19 100.5 131 46.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.0e-19 100.5 118 48.3
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-19 99.4 126 50.0
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.3e-19 99.4 123 46.3
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.3e-19 99.4 124 46.0
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.0e-19 99.0 119 46.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.9e-19 98.6 130 47.7
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.1e-19 98.2 129 47.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 6.7e-19 97.8 134 45.5
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.7e-19 97.4 133 44.4
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.1e-18 97.1 126 49.2
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.5e-18 96.7 125 45.6
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.5e-18 95.9 128 46.1
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.5e-18 95.9 133 45.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.3e-18 95.5 125 44.0
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.3e-18 95.1 130 43.1
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 5.6e-18 94.7 124 45.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 5.6e-18 94.7 140 43.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 7.4e-18 94.4 133 45.1
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 7.4e-18 94.4 148 43.2
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 9.6e-18 94.0 135 45.2
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.3e-17 93.6 133 45.1
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.3e-17 93.6 137 43.8
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.3e-17 93.6 137 43.8
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.3e-17 93.6 125 44.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.3e-17 93.6 133 44.4
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.6e-17 93.2 130 45.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.1e-17 92.8 126 48.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.8e-17 92.4 129 43.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.8e-17 92.4 129 43.4
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 3.6e-17 92.0 132 43.9
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 3.6e-17 92.0 126 43.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.8e-17 91.7 124 46.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.8e-17 91.7 130 44.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 4.8e-17 91.7 125 48.0
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.2e-17 91.3 130 45.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.1e-16 90.5 124 46.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.4e-16 90.1 126 48.4
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.4e-16 90.1 126 48.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.8e-16 89.7 145 37.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.8e-16 89.7 127 42.5
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.4e-16 89.4 126 48.4
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 5.3e-16 88.2 119 47.1
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 6.9e-16 87.8 130 40.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 6.9e-16 87.8 135 44.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 9.0e-16 87.4 127 45.7
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-15 87.0 122 44.3
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.0e-15 86.3 95 53.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.6e-15 85.9 132 45.5
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.4e-15 85.5 129 41.1
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.4e-15 85.5 131 43.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 4.5e-15 85.1 125 45.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 5.8e-15 84.7 124 44.4
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.9e-15 84.0 130 42.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.3e-14 83.6 122 43.4
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 2.2e-14 82.8 130 43.8
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.9e-14 82.4 125 44.8
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.9e-14 82.4 123 43.9
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.9e-14 81.6 120 45.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.4e-14 80.9 123 43.1
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 130 41.5
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.1e-13 80.5 119 44.5
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.9e-13 79.7 125 44.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 3.2e-13 79.0 89 50.6
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 3.2e-13 79.0 89 50.6
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.5e-13 78.2 129 43.4
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 7.1e-13 77.8 127 41.7
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 9.3e-13 77.4 136 39.0
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.6e-12 76.6 155 35.5
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.6e-12 76.6 129 40.3
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.5e-12 75.5 148 37.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.6e-12 75.1 145 39.3
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 7.9e-12 74.3 123 39.0
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.8e-11 73.2 165 37.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.8e-11 73.2 143 35.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.8e-11 73.2 133 40.6
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.0e-11 72.4 122 38.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.0e-11 72.4 124 41.1
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.9e-11 72.0 170 32.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.5e-10 70.1 138 37.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 4.3e-10 68.6 63 58.7
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 9.6e-10 67.4 83 47.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.1e-09 66.2 118 38.1
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.4e-08 63.5 63 54.0
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.4e-08 63.5 161 31.1
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.5e-07 60.1 64 54.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.6e-07 59.3 67 47.8
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 5.8e-07 58.2 144 31.9


User provided reference genes

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