Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 0.0e+00 1397.9 692 100.0
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 0.0e+00 1355.1 721 94.0
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 0.0e+00 1188.7 725 81.8
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 0.0e+00 1146.0 630 90.5
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 0.0e+00 1142.9 717 78.7
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 0.0e+00 1116.7 712 77.2
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 8.7e-248 860.5 701 61.1
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.9e-247 859.4 696 61.8
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.9e-247 859.4 713 64.2
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 8.1e-246 854.0 694 62.1
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 2.1e-241 839.3 698 58.9
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.2e-236 823.5 757 55.5
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.5e-236 823.2 723 57.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.9e-235 818.9 707 57.3
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.1e-234 817.0 710 58.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.1e-234 817.0 701 58.5
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.1e-233 812.8 698 57.2
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.6e-233 811.6 703 57.0
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 3.0e-232 808.9 710 58.5
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 5.1e-232 808.1 700 58.7
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 7.4e-231 804.3 700 57.7
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 9.6e-231 803.9 728 58.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.6e-230 803.1 745 55.4
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 2.8e-230 802.4 697 57.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.8e-229 799.7 707 57.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.8e-229 799.7 697 57.1
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 9.0e-229 797.3 703 57.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.5e-228 796.6 658 59.7
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.7e-227 793.1 729 57.5
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 5.0e-227 791.6 704 58.2
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.9e-226 789.6 733 55.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 3.2e-226 788.9 733 55.4
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.2e-226 787.7 695 56.4
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 3.0e-224 782.3 700 57.3
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 3.9e-224 781.9 696 56.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 8.7e-224 780.8 699 56.1
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.5e-223 780.0 698 57.7
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 4.3e-223 778.5 700 57.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.8e-222 775.8 764 52.2
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.1e-221 773.9 723 54.5
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 3.1e-221 772.3 700 55.9
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.5e-220 770.0 707 56.3
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.6e-220 769.2 716 55.9
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 5.9e-220 768.1 619 61.4
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.2e-219 766.1 695 56.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.9e-219 765.8 704 56.4
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.8e-219 765.4 695 56.3
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.9e-218 763.1 696 54.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.9e-218 763.1 698 56.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 2.5e-218 762.7 696 55.7
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 2.5e-218 762.7 702 55.7
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 7.2e-218 761.1 725 54.6
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 7.2e-218 761.1 717 54.4
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 2.7e-217 759.2 722 54.2
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.0e-215 753.1 697 56.4
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 3.3e-215 752.3 711 54.1
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 3.7e-214 748.8 712 54.2
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 5.3e-213 745.0 667 55.3
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 5.3e-213 745.0 686 55.1
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 5.9e-212 741.5 703 55.8
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 7.7e-212 741.1 725 53.1
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.8e-211 738.8 657 56.6
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.5e-210 736.1 700 54.9
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.5e-210 736.1 719 53.3
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 5.5e-210 734.9 699 53.9
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 7.2e-210 734.6 651 57.3
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.0e-208 730.7 712 53.7
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.0e-208 730.7 699 53.5
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 7.7e-204 714.5 718 52.6
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 7.7e-204 714.5 705 53.5
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 7.7e-204 714.5 701 52.8
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.0e-203 714.1 726 51.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.3e-203 713.8 702 53.6
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.9e-203 712.6 702 53.4
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 8.5e-203 711.1 702 52.3
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.5e-202 709.5 727 51.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.2e-202 709.1 724 51.0
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 7.2e-202 708.0 724 52.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.2e-201 707.2 720 51.2
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.1e-201 706.4 739 52.0
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 3.6e-201 705.7 676 53.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 5.7e-199 698.4 685 52.4
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 5.3e-197 691.8 576 59.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 7.7e-196 688.0 729 50.2
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.7e-195 686.8 703 51.8
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 8.5e-195 684.5 732 49.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 5.2e-192 675.2 623 57.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.3e-190 670.6 747 49.8
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.4e-189 666.4 727 48.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.6e-188 663.7 716 47.8
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 7.7e-188 661.4 709 47.5
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 7.3e-178 628.2 701 46.9
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 6.6e-171 605.1 696 46.4
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 7.3e-162 575.1 681 47.1
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.1e-160 569.7 548 53.1
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.4e-158 562.0 712 42.6
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.6e-155 551.6 591 50.3
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.2e-145 518.8 472 54.7
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.8e-123 447.6 366 61.5
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 9.3e-117 425.2 668 38.5
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 3.7e-113 413.3 494 46.8
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 5.0e-110 402.9 402 53.0
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.5e-110 402.1 718 34.0
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 4.2e-109 399.8 371 55.8
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.6e-105 387.9 672 37.2
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 2.1e-100 370.9 774 33.9
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.8e-99 367.9 344 54.9
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 8.2e-97 359.0 700 32.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.2e-93 347.1 744 31.7
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.6e-92 344.7 758 32.3
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.8e-89 334.0 693 32.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 9.2e-64 249.2 283 49.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-63 248.8 332 43.7
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-53 215.7 140 72.9
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.5e-53 215.3 139 71.9
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.8e-51 208.4 191 53.9
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.3e-51 208.0 557 29.8
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 8.6e-46 189.5 177 56.5
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.6e-44 185.3 166 54.2
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.4e-40 171.4 356 32.3
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 2.1e-31 141.7 125 57.6
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.1e-31 141.7 128 47.7
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.9e-30 137.5 458 26.9
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.2e-28 130.2 77 80.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.1e-27 127.9 77 77.9
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 7.1e-24 116.7 103 49.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.9e-22 110.9 75 62.7
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 6.9e-11 73.6 69 50.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 3.8e-09 67.8 396 22.2
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.1e-08 66.2 59 55.9
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.0e-06 59.7 60 53.3
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 8.7e-06 56.6 49 57.1


User provided reference genes

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