Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-141 506.5 266 100.0
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 6.7e-140 500.7 266 98.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.2e-135 485.7 266 96.2
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.6e-117 426.4 263 85.2
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.0e-116 423.7 260 85.0
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 2.2e-114 416.0 264 83.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-113 413.3 260 81.9
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.7e-74 283.5 265 57.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-73 280.0 266 55.6
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.9e-73 280.0 262 60.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-73 279.6 266 55.6
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.4e-73 279.6 265 55.1
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.4e-73 278.5 264 57.6
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 4.6e-72 275.4 262 55.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 6.0e-72 275.0 266 54.9
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 3.9e-71 272.3 268 53.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 4.3e-70 268.9 265 57.7
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.6e-70 268.5 203 67.5
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 5.6e-70 268.5 265 54.3
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.8e-69 266.2 205 67.3
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.6e-69 265.8 262 53.1
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-68 264.2 262 52.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.8e-68 263.5 265 55.8
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.8e-68 263.5 262 52.7
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.8e-68 263.5 203 67.0
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 2.4e-68 263.1 262 52.7
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-68 263.1 262 52.7
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-68 263.1 262 52.7
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.2e-68 261.9 262 53.1
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.5e-67 260.4 262 52.3
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.2e-66 256.5 263 52.5
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 4.9e-66 255.4 262 51.9
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 8.4e-66 254.6 267 50.9
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.4e-65 253.1 266 53.8
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.4e-65 253.1 262 52.3
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 3.2e-65 252.7 277 51.3
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 3.2e-65 252.7 267 51.3
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.2e-65 252.3 262 51.9
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 4.2e-65 252.3 266 52.3
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 7.1e-65 251.5 265 51.7
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 9.3e-65 251.1 265 52.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 9.3e-65 251.1 267 51.7
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.2e-64 250.8 268 52.2
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.1e-64 250.0 262 50.8
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 2.1e-64 250.0 268 52.2
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.7e-64 249.6 268 51.5
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 4.6e-64 248.8 269 50.6
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.6e-64 248.8 274 51.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.0e-63 247.7 264 50.8
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-63 247.3 262 55.3
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 8.7e-63 244.6 262 52.3
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 8.7e-63 244.6 264 51.1
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.5e-62 243.8 261 49.8
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.5e-62 243.8 268 50.7
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.9e-62 243.4 271 50.9
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.9e-62 243.4 266 52.3
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 3.3e-62 242.7 274 49.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 5.6e-62 241.9 277 49.8
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 2.8e-61 239.6 267 50.9
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.6e-61 239.2 268 50.7
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.2e-61 238.4 265 51.3
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 8.1e-61 238.0 268 48.5
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.4e-60 237.3 268 50.0
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 5.3e-60 235.3 273 48.0
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.0e-60 234.6 234 53.0
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-59 233.4 234 52.1
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.9e-58 228.8 268 48.5
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.9e-58 228.8 202 60.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.9e-58 228.8 202 60.4
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.4e-58 228.0 247 51.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.4e-57 226.5 202 59.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.2e-56 224.2 270 48.5
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 1.6e-56 223.8 263 47.5
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.7e-56 223.0 263 47.1
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 3.5e-56 222.6 245 50.6
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.0e-56 221.9 202 58.9
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.3e-55 219.9 227 54.6
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.3e-55 219.9 264 45.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.3e-55 219.9 269 49.8
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 5.1e-55 218.8 264 46.2
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 5.1e-55 218.8 262 45.8
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.3e-54 216.1 265 46.4
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 7.4e-54 214.9 265 46.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 9.6e-54 214.5 264 44.7
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.8e-53 213.0 262 47.7
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 3.7e-53 212.6 261 47.5
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.4e-52 209.9 265 46.8
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.4e-52 209.9 267 46.8
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 9.0e-52 208.0 262 47.7
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.4e-51 206.1 266 44.7
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.4e-51 206.1 264 46.6
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 4.5e-51 205.7 224 54.0
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 5.8e-51 205.3 263 46.4
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 7.6e-51 204.9 260 45.0
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 2.2e-50 203.4 261 46.7
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.9e-50 202.2 263 44.1
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 6.4e-50 201.8 260 44.6
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 6.4e-50 201.8 263 44.5
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 8.4e-50 201.4 260 44.6
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.1e-49 201.1 262 45.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.9e-49 200.3 262 46.9
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.2e-49 199.1 266 43.2
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.2e-49 199.1 266 43.2
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.2e-49 199.1 170 57.1
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.2e-48 197.6 262 44.3
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.2e-48 197.6 263 43.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.6e-48 197.2 264 45.1
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.6e-48 197.2 264 45.1
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.1e-48 196.8 260 44.2
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.1e-48 196.8 260 44.2
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.1e-48 196.8 262 45.4
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 6.0e-48 195.3 261 44.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.0e-47 194.5 260 42.3
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.8e-47 193.7 266 42.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.3e-47 193.4 267 41.6
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 3.9e-47 192.6 260 40.4
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.9e-47 192.6 263 46.0
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 3.9e-47 192.6 263 44.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 6.7e-47 191.8 264 42.8
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 8.7e-47 191.4 260 43.8
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.9e-46 190.3 263 44.1
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.5e-46 189.9 260 41.9
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 3.3e-46 189.5 158 60.1
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.8e-45 186.4 260 43.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.2e-45 184.9 256 42.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.4e-44 184.1 271 41.7
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.3e-44 182.2 262 39.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 6.9e-44 181.8 270 41.9
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 9.0e-44 181.4 266 44.7
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.4e-43 179.5 265 43.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.1e-41 174.5 267 40.1
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.5e-41 172.2 265 41.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 5.1e-39 165.6 267 39.3
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.1e-38 164.5 255 39.2
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.8e-36 157.1 257 36.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 6.9e-36 155.2 262 37.4
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.2e-35 154.5 274 35.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.6e-35 153.3 128 59.4
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 3.8e-34 149.4 170 46.5
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.4e-33 147.5 116 56.9
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.5e-33 146.7 262 35.9
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 7.2e-33 145.2 156 45.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.2e-32 144.4 150 46.7
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-32 144.1 105 61.9
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.5e-30 137.5 116 56.0
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.3e-30 136.3 218 40.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.2e-26 123.6 123 49.6
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 2.5e-25 120.2 164 44.5
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.6e-24 116.3 108 50.0
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.9e-24 115.2 81 70.4
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.5e-17 92.4 68 66.2
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 8.0e-16 88.6 188 33.5
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.6e-14 83.6 94 42.6
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 4.4e-14 82.8 282 26.2
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 2.8e-13 80.1 104 35.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 6.3e-13 79.0 309 26.9
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 2.2e-10 70.5 255 28.2
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-10 68.6 94 37.2


User provided reference genes

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