Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 7.3e-284 979.9 515 100.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 3.0e-269 931.4 519 95.8
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 3.8e-256 887.9 520 91.5
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.3e-192 676.0 516 73.4
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.6e-185 651.7 518 71.6
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.4e-180 635.2 507 71.4
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 5.6e-66 256.1 601 36.8
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 5.2e-64 249.6 546 36.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 6.8e-64 249.2 533 38.5
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.5e-63 248.1 528 36.4
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.9e-62 243.8 516 39.1
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 5.4e-61 239.6 523 35.9
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 5.4e-61 239.6 532 36.5
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 9.2e-61 238.8 556 34.2
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 9.2e-61 238.8 541 37.2
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.6e-60 238.0 528 37.5
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 6.6e-59 232.6 541 36.4
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 6.6e-59 232.6 524 37.2
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.1e-58 231.9 554 35.6
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 9.5e-58 228.8 551 33.6
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.1e-57 227.6 515 36.3
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 4.7e-57 226.5 557 35.0
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.1e-57 225.7 515 35.7
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 1.1e-56 225.3 526 34.4
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.8e-56 224.6 557 34.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 5.2e-56 223.0 541 35.5
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 6.8e-56 222.6 527 37.6
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 6.8e-56 222.6 541 33.6
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 8.9e-56 222.2 515 34.0
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.6e-55 220.7 565 34.7
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.6e-55 220.7 527 34.3
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.4e-55 219.9 535 35.3
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.7e-54 218.0 540 34.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.9e-54 217.2 537 34.8
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 1.1e-53 215.3 539 32.7
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.4e-53 214.9 534 34.8
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.9e-53 214.5 142 76.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.9e-53 214.5 534 34.5
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.2e-52 211.8 514 35.8
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 4.6e-52 209.9 540 32.4
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.7e-51 208.0 541 32.7
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.7e-51 208.0 530 34.7
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.5e-50 204.9 520 34.0
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.9e-50 204.5 537 33.1
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 9.6e-50 202.2 524 33.6
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.2e-49 201.8 511 34.6
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.6e-49 200.3 524 34.5
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 6.2e-49 199.5 548 33.4
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.8e-48 198.0 551 33.0
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.4e-48 197.6 524 32.1
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 5.2e-48 196.4 533 33.0
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 4.4e-47 193.4 543 34.1
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.8e-47 193.0 140 70.0
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.3e-46 191.8 554 31.2
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.3e-46 191.8 140 70.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.7e-46 191.4 525 33.1
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 4.9e-46 189.9 529 33.3
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.4e-45 188.3 555 31.5
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.4e-45 188.3 200 55.5
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.9e-45 188.0 542 33.2
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 3.2e-45 187.2 518 31.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 3.2e-45 187.2 530 31.1
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 7.8e-44 182.6 562 31.5
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.0e-43 182.2 525 33.0
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.7e-43 181.4 528 31.6
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.1e-42 178.7 534 32.0
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.1e-42 178.7 508 33.7
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 1.5e-42 178.3 522 33.0
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 2.5e-42 177.6 529 31.4
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 2.5e-42 177.6 538 32.5
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 5.6e-42 176.4 536 31.7
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 9.6e-42 175.6 269 45.4
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 4.8e-41 173.3 535 31.0
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 8.1e-41 172.6 527 33.0
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 8.1e-41 172.6 532 32.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 2.4e-40 171.0 544 32.4
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.5e-39 168.3 520 30.0
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.4e-39 166.8 528 31.6
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 9.9e-39 165.6 532 31.6
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 8.4e-38 162.5 206 52.4
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 1.4e-37 161.8 533 30.2
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.4e-37 161.0 558 28.7
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 5.4e-37 159.8 126 64.3
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.6e-36 158.3 550 30.4
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 2.1e-36 157.9 545 30.6
CAN.G42.6 Capsicum annuum HOM05D006793 ORTHO05D003476 3.5e-36 157.1 127 65.4
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 3.5e-36 157.1 540 30.6
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.0e-35 155.6 556 30.2
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 8.7e-35 152.5 523 31.2
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 8.7e-35 152.5 523 31.2
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.3e-34 150.6 530 29.6
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 5.6e-34 149.8 115 68.7
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 7.3e-34 149.4 531 29.9
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 3.6e-33 147.1 256 39.1
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 4.8e-33 146.7 528 29.5
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 8.1e-33 146.0 117 66.7
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 9.0e-32 142.5 543 28.7
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.5e-31 141.7 550 30.9
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.4e-31 140.6 498 29.3
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 4.5e-31 140.2 523 29.1
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 7.6e-31 139.4 531 30.7
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.7e-30 138.3 514 30.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.0e-27 127.5 501 28.9
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 5.6e-26 123.2 114 57.0
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.1e-24 119.0 288 32.3
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 9.0e-24 115.9 352 32.1
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 9.3e-21 105.9 220 36.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.2e-20 105.5 481 27.7
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 2.7e-20 104.4 543 26.2
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 4.6e-20 103.6 97 55.7
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 2.3e-19 101.3 68 67.6
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 3.0e-19 100.9 67 70.1
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 1.1e-16 92.4 515 24.9
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 5.3e-16 90.1 215 34.0
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 6.9e-16 89.7 482 25.1
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 3.4e-15 87.4 352 27.8
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 3.4e-15 87.4 310 28.1
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 6.5e-14 83.2 360 27.2
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 5.5e-13 80.1 90 46.7
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.6e-12 78.6 227 31.3
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.0e-11 74.3 79 43.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.5e-10 72.0 83 43.4
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.5e-10 71.2 78 41.0
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.3e-10 70.9 218 27.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 4.3e-10 70.5 101 36.6
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 7.4e-10 69.7 217 26.3
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 7.4e-10 69.7 104 34.6
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.4e-10 69.7 116 37.1
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.7e-09 67.4 125 32.8
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.8e-09 67.0 41 78.0
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 4.8e-09 67.0 141 29.8
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 6.3e-09 66.6 81 42.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.4e-08 65.5 93 34.4
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.4e-08 64.7 79 35.4
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.4e-08 64.7 79 38.0
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 4.1e-08 63.9 63 44.4
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 4.1e-08 63.9 245 26.1
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 5.3e-08 63.5 63 41.3
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 5.3e-08 63.5 244 25.4
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 5.3e-08 63.5 75 40.0
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 5.3e-08 63.5 81 40.7
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 6.9e-08 63.2 215 26.0
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 9.0e-08 62.8 253 26.1
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.2e-07 62.4 80 33.8
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.2e-07 62.4 115 26.1
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.5e-07 62.0 75 38.7
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 2.0e-07 61.6 61 44.3
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 2.6e-07 61.2 63 42.9
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 2.6e-07 61.2 63 44.4
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.6e-07 61.2 80 35.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.4e-07 60.8 148 29.7
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 3.4e-07 60.8 76 39.5
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 4.5e-07 60.5 75 37.3
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 4.5e-07 60.5 71 36.6
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 4.5e-07 60.5 188 27.1
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 7.7e-07 59.7 85 36.5
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 7.7e-07 59.7 180 29.4
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.3e-06 58.9 116 32.8
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.3e-06 58.9 57 43.9
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.3e-06 58.9 76 36.8
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 2.2e-06 58.2 178 31.5
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.2e-06 58.2 313 23.0
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.9e-06 57.8 60 41.7
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 5.0e-06 57.0 61 44.3
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 6.5e-06 56.6 78 41.0
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 8.5e-06 56.2 355 22.3


User provided reference genes

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