Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1694.5 851 100.0
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1686.0 851 99.5
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1482.2 869 85.5
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1382.9 887 80.3
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 0.0e+00 1367.4 739 92.2
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 0.0e+00 1327.8 736 91.3
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1298.9 853 76.0
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1275.0 856 73.6
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1265.8 850 73.3
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1263.8 851 73.8
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1244.6 848 74.2
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1233.4 907 69.2
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1223.4 854 71.3
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1218.4 849 71.7
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1217.2 857 70.6
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1208.4 857 70.1
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1208.0 855 70.6
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1206.8 851 70.9
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1199.1 850 70.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1196.4 830 71.2
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1193.3 849 70.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1191.8 857 69.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1190.3 854 70.6
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1190.3 836 70.6
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1180.6 848 69.5
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1178.7 848 69.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1177.9 853 70.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1177.2 858 69.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 957 64.2
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 851 69.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 854 69.1
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1170.6 848 68.9
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1165.6 876 67.2
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1165.2 854 68.9
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 853 68.2
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1161.0 815 71.9
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1159.1 836 69.6
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 857 68.6
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1156.7 851 68.0
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1156.0 852 68.0
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 852 68.2
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 834 69.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 850 68.7
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1151.7 855 67.8
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1151.3 852 67.7
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 856 68.3
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 857 68.1
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 857 67.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1148.3 831 69.0
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1147.5 855 67.7
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 856 68.5
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 856 68.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1146.3 850 68.5
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1145.2 856 68.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1142.9 864 66.9
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1140.9 867 68.3
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1139.4 853 66.7
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1134.0 881 65.5
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 848 66.7
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1124.8 870 66.6
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1120.1 870 66.3
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1115.1 851 66.5
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 853 66.6
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 824 67.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 856 66.0
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1107.4 765 71.4
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1107.0 851 67.0
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1105.9 754 73.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 849 66.1
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1100.1 854 65.0
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 763 71.0
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1096.6 868 65.6
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1096.6 938 61.7
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 855 65.1
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1095.1 854 64.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1092.4 837 65.6
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 949 61.6
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 727 73.6
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 858 64.2
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1084.3 838 64.9
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 854 64.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 837 65.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1077.4 870 63.9
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 5.8e-312 1073.9 847 64.0
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.2e-311 1073.2 908 62.4
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 5.4e-308 1060.8 761 68.9
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.5e-305 1052.7 845 63.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 5.6e-305 1050.8 860 63.3
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.1e-303 1046.6 851 62.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-303 1046.6 851 62.3
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.4e-302 1041.2 855 62.7
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 6.4e-301 1037.3 851 62.4
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.4e-300 1036.2 832 63.9
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.7e-296 1021.1 702 72.4
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.3e-295 1018.8 855 60.6
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 5.2e-295 1017.7 850 61.5
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 1.2e-294 1016.5 1006 55.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 5.8e-294 1014.2 847 61.7
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 5.8e-294 1014.2 850 61.4
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 2.2e-293 1012.3 824 62.5
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.9e-292 1009.2 847 61.5
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 2.4e-292 1008.8 851 61.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 2.4e-292 1008.8 851 61.5
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.9e-289 999.2 853 60.4
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 9.6e-281 970.3 850 59.3
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 8.1e-280 967.2 697 71.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.8e-279 966.1 786 62.2
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.7e-274 949.5 716 66.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.6e-270 935.6 787 61.4
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 9.3e-268 927.2 837 58.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.1e-267 926.0 838 58.1
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.8e-266 922.9 718 64.6
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.0e-262 909.4 844 57.2
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 3.0e-242 842.4 849 54.2
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 8.2e-240 834.3 677 63.5
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.0e-237 825.1 755 62.4
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 4.8e-232 808.5 529 74.7
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 3.0e-226 789.3 774 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 7.4e-225 784.6 854 50.8
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.6e-206 723.8 536 68.1
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 5.2e-202 708.8 859 47.0
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.3e-200 701.4 877 46.6
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.7e-197 693.7 865 45.8
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.2e-191 672.9 474 71.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-166 591.3 453 67.1
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.5e-161 574.3 548 56.0
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.7e-157 560.8 759 46.6
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.6e-155 553.1 493 61.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 8.1e-155 552.0 805 42.4
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 9.0e-154 548.5 468 60.7
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 4.5e-153 546.2 466 60.1
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.8e-153 545.8 458 61.1
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.9e-152 543.5 386 70.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 7.1e-151 538.9 384 68.5
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.5e-124 450.7 460 53.5
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.5e-121 439.9 364 63.5
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.0e-120 436.4 352 64.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.9e-119 434.5 294 73.1
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.6e-113 414.1 384 54.9
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 8.5e-112 409.1 313 67.1
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.3e-107 395.2 290 67.6
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 6.8e-93 346.3 319 57.4
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.8e-85 321.6 201 76.6
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.3e-83 315.5 289 54.7
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 3.6e-78 297.4 245 61.2
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.0e-72 279.3 159 93.7
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 7.8e-65 253.1 185 63.8
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.2e-61 240.4 176 65.9
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.7e-59 235.3 155 74.2
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.9e-56 224.2 163 65.0
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-45 189.5 269 42.8
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.3e-43 182.6 128 72.7
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.7e-43 182.2 492 29.9
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 7.1e-34 150.2 88 85.2
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.1e-30 138.7 128 60.9
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 4.8e-30 137.5 72 93.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.7e-27 129.0 114 57.9
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-26 126.3 120 60.8
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.6e-20 105.1 105 53.3
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.6e-20 105.1 75 70.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 9.3e-18 96.7 61 77.0
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 5.1e-16 90.9 60 73.3
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.5e-15 88.6 71 62.0
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 2.4e-13 82.0 69 60.9
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-07 62.8 83 45.8
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.5e-07 62.8 37 83.8
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-06 59.7 44 65.9


User provided reference genes

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