Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007640.2 Solanum lycopersicum HOM05D002372 ORTHO05D002592 2.2e-93 345.5 160 100.0
Actinidia34365 Actinidia chinensis HOM05D002372 ORTHO05D002592 4.0e-31 138.7 174 48.3
Dinv15800 Davidia involucrata HOM05D002372 ORTHO05D002592 1.5e-30 136.7 174 48.3
Nitab4.5_0001105g0080 Nicotiana tabacum HOM05D002372 ORTHO05D002592 2.0e-30 136.3 174 48.3
CSS0031062 Camellia sinensis var. sinensis HOM05D002372 ORTHO05D002592 2.6e-30 136.0 174 47.1
Duzib052G0254 Durio zibethinus HOM05D002372 ORTHO05D002592 2.6e-30 136.0 172 47.7
Rhsim11G0153700 Rhododendron simsii HOM05D002372 ORTHO05D002592 2.6e-30 136.0 171 48.5
RhsimUnG0124900 Rhododendron simsii HOM05D002372 ORTHO05D002592 2.6e-30 136.0 171 48.5
Ca_24354_v3 Cicer arietinum L. HOM05D002372 ORTHO05D002592 3.4e-30 135.6 174 47.1
GSVIVG01037848001 Vitis vinifera HOM05D002372 ORTHO05D002592 3.4e-30 135.6 172 47.1
MSTRG.5319 Avicennia marina HOM05D002372 ORTHO05D002592 4.5e-30 135.2 174 47.7
CSS0027801 Camellia sinensis var. sinensis HOM05D002372 ORTHO05D002592 4.5e-30 135.2 174 47.7
MELO3C017995.2 Cucumis melo HOM05D002372 ORTHO05D002592 4.5e-30 135.2 172 47.7
Gorai.013G050200 Gossypium raimondii HOM05D002372 ORTHO05D002592 4.5e-30 135.2 172 47.7
Nitab4.5_0012134g0010 Nicotiana tabacum HOM05D002372 ORTHO05D002592 4.5e-30 135.2 174 47.7
Sed0011895 Sechium edule HOM05D002372 ORTHO05D002592 4.5e-30 135.2 172 47.7
Solyc01g107160.3 Solanum lycopersicum HOM05D002372 ORTHO05D002592 4.5e-30 135.2 172 47.1
Sopen01g049420 Solanum pennellii HOM05D002372 ORTHO05D002592 4.5e-30 135.2 172 47.1
PGSC0003DMG400025750 Solanum tuberosum HOM05D002372 ORTHO05D002592 4.5e-30 135.2 172 47.1
Manes.10G079800 Manihot esculenta HOM05D002372 ORTHO05D002592 5.8e-30 134.8 174 47.7
Thecc.02G115700 Theobroma cacao HOM05D002372 ORTHO05D002592 5.8e-30 134.8 174 47.7
Gohir.A03G183200 Gossypium hirsutum HOM05D002372 ORTHO05D002592 7.6e-30 134.4 172 47.7
Gohir.D02G204800 Gossypium hirsutum HOM05D002372 ORTHO05D002592 7.6e-30 134.4 172 47.7
Gorai.005G232100 Gossypium raimondii HOM05D002372 ORTHO05D002592 7.6e-30 134.4 172 47.7
Prupe.8G143300 Prunus persica HOM05D002372 ORTHO05D002592 7.6e-30 134.4 173 48.0
ECA236G1515 Erigeron canadensis HOM05D002372 ORTHO05D002592 9.9e-30 134.0 172 45.9
Glyma.10G258300 Glycine max HOM05D002372 ORTHO05D002592 9.9e-30 134.0 172 47.1
QL11p030894 Quercus lobata HOM05D002372 ORTHO05D002592 9.9e-30 134.0 174 47.1
TAR625G0713 Trochodendron aralioides HOM05D002372 ORTHO05D002592 9.9e-30 134.0 172 47.7
Ciclev10028761m.g Citrus clementina HOM05D002372 ORTHO05D002592 1.3e-29 133.7 173 46.2
CsaV3_4G000390 Cucumis sativus L. HOM05D002372 ORTHO05D002592 1.3e-29 133.7 172 47.1
Duzib132G0475 Durio zibethinus HOM05D002372 ORTHO05D002592 1.3e-29 133.7 172 47.1
Gohir.A13G046300 Gossypium hirsutum HOM05D002372 ORTHO05D002592 1.3e-29 133.7 172 47.1
MD05G1098500 Malus domestica HOM05D002372 ORTHO05D002592 1.3e-29 133.7 174 46.6
MD10G1104300 Malus domestica HOM05D002372 ORTHO05D002592 1.3e-29 133.7 174 46.6
vmacro01968 Vaccinium macrocarpon HOM05D002372 ORTHO05D002592 1.3e-29 133.7 173 47.4
CANSAT25G2730 Cannabis sativa HOM05D002372 ORTHO05D002592 2.2e-29 132.9 174 47.1
ClCG10G010490 Citrullus lanatus HOM05D002372 ORTHO05D002592 2.2e-29 132.9 172 47.1
Gohir.D13G045401 Gossypium hirsutum HOM05D002372 ORTHO05D002592 2.2e-29 132.9 172 47.1
Sc18g0003480 Simmondsia chinensis HOM05D002372 ORTHO05D002592 2.2e-29 132.9 173 48.0
HPP92_009535 Vanilla planifolia HOM05D002372 ORTHO05D002592 2.2e-29 132.9 174 47.7
CiPaw.05G016800 Carya illinoinensis HOM05D002372 ORTHO05D002592 2.9e-29 132.5 174 46.6
CiPaw.06G166200 Carya illinoinensis HOM05D002372 ORTHO05D002592 2.9e-29 132.5 174 46.6
Dinv42231 Davidia involucrata HOM05D002372 ORTHO05D002592 2.9e-29 132.5 174 47.7
Migut.B00441 Erythranthe guttata HOM05D002372 ORTHO05D002592 2.9e-29 132.5 174 46.6
HPP92_009546 Vanilla planifolia HOM05D002372 ORTHO05D002592 2.9e-29 132.5 174 47.1
Cpa.g.sc106.59 Carica papaya HOM05D002372 ORTHO05D002592 3.8e-29 132.1 174 47.1
Cc02_g19760 Coffea canephora HOM05D002372 ORTHO05D002592 3.8e-29 132.1 174 47.7
Glyma.20G133400 Glycine max HOM05D002372 ORTHO05D002592 3.8e-29 132.1 172 46.5
Peaxi162Scf00016g02810 Petunia axillaris HOM05D002372 ORTHO05D002592 3.8e-29 132.1 174 47.7
Phvul.007G044000 Phaseolus vulgaris HOM05D002372 ORTHO05D002592 3.8e-29 132.1 174 47.1
TWI23G1219 Tripterygium wilfordii HOM05D002372 ORTHO05D002592 3.8e-29 132.1 172 46.5
Cfa004637 Carpinus fangiana HOM05D002372 ORTHO05D002592 4.9e-29 131.7 172 46.5
Lj1g0013878 Lotus japonicus HOM05D002372 ORTHO05D002592 4.9e-29 131.7 172 45.9
Oeu021364.1 Olea europaea HOM05D002372 ORTHO05D002592 4.9e-29 131.7 172 45.9
Phvul.007G044700 Phaseolus vulgaris HOM05D002372 ORTHO05D002592 4.9e-29 131.7 172 46.5
Duzib248G1619 Durio zibethinus HOM05D002372 ORTHO05D002592 6.4e-29 131.3 172 46.5
Medtr5g005120 Medicago truncatula HOM05D002372 ORTHO05D002592 6.4e-29 131.3 174 46.0
TAR381G0570 Trochodendron aralioides HOM05D002372 ORTHO05D002592 6.4e-29 131.3 175 47.4
VMungo0720G2618 Vigna mungo HOM05D002372 ORTHO05D002592 6.4e-29 131.3 172 46.5
arahy.Tifrunner.gnm1.ann1.M9B1UW Arachis hypogaea HOM05D002372 ORTHO05D002592 8.4e-29 131.0 175 46.9
Hund12570 Selenicereus undatus HOM05D002372 ORTHO05D002592 8.4e-29 131.0 171 46.8
THA.LOC104815226 Tarenaya hassleriana HOM05D002372 ORTHO05D002592 1.1e-28 130.6 172 46.5
MSTRG.16683 Avicennia marina HOM05D002372 ORTHO05D002592 1.4e-28 130.2 172 45.9
Eucgr.I01072 Eucalyptus grandis HOM05D002372 ORTHO05D002592 1.4e-28 130.2 172 46.5
Potri.001G295100 Populus trichocarpa HOM05D002372 ORTHO05D002592 1.4e-28 130.2 172 46.5
PSO017G4125 Papaver somniferum HOM05D002372 ORTHO05D002592 1.9e-28 129.8 174 46.6
PSO170G0394 Papaver somniferum HOM05D002372 ORTHO05D002592 1.9e-28 129.8 174 46.6
THA.LOC104825383 Tarenaya hassleriana HOM05D002372 ORTHO05D002592 1.9e-28 129.8 172 46.5
Atru.chr5.2375 Acer truncatum HOM05D002372 ORTHO05D002592 2.4e-28 129.4 174 47.1
Glyma.20G132800 Glycine max HOM05D002372 ORTHO05D002592 3.2e-28 129.0 172 45.9
HanXRQChr03g0069911 Helianthus annuus HOM05D002372 ORTHO05D002592 3.2e-28 129.0 171 45.0
SGA_v2.0_scaffold225G43030 Striga asiatica HOM05D002372 ORTHO05D002592 3.2e-28 129.0 185 43.2
Psat4g227840 Pisum sativum HOM05D002372 ORTHO05D002592 4.2e-28 128.6 172 45.9
RcHm_v2.0_Chr6g0253521 Rosa chinensis HOM05D002372 ORTHO05D002592 4.2e-28 128.6 173 46.2
FvH4_2g04170 Fragaria vesca HOM05D002372 ORTHO05D002592 5.4e-28 128.3 173 45.7
FAN24G0362 Fragaria x ananassa HOM05D002372 ORTHO05D002592 5.4e-28 128.3 173 45.7
FAN27G2015 Fragaria x ananassa HOM05D002372 ORTHO05D002592 5.4e-28 128.3 173 45.7
Potri.009G089200 Populus trichocarpa HOM05D002372 ORTHO05D002592 5.4e-28 128.3 174 46.6
VMungo0720G0450 Vigna mungo HOM05D002372 ORTHO05D002592 5.4e-28 128.3 172 44.8
Aqoxy5G00888 Aquilegia oxysepala HOM05D002372 ORTHO05D002592 7.1e-28 127.9 174 44.8
arahy.Tifrunner.gnm1.ann1.4F9CQB Arachis hypogaea HOM05D002372 ORTHO05D002592 7.1e-28 127.9 175 46.3
SalBow3G2017 Salvia bowleyana HOM05D002372 ORTHO05D002592 9.3e-28 127.5 185 43.8
EL10Ac8g19381 Beta vulgaris HOM05D002372 ORTHO05D002592 1.2e-27 127.1 171 45.6
COL.COLO4_32527 Corchorus olitorius HOM05D002372 ORTHO05D002592 1.2e-27 127.1 163 47.9
TPR.G8288 Trifolium pratense HOM05D002372 ORTHO05D002592 1.2e-27 127.1 184 44.0
AL3G33020 Arabidopsis lyrata HOM05D002372 ORTHO05D002592 1.6e-27 126.7 174 44.8
Migut.N01143 Erythranthe guttata HOM05D002372 ORTHO05D002592 1.6e-27 126.7 185 43.8
FAN15G2929 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.6e-27 126.7 173 45.1
FAN20G2817 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.6e-27 126.7 173 45.1
Nn1g04590 Nelumbo nucifera HOM05D002372 ORTHO05D002592 1.6e-27 126.7 172 45.9
PGR120G0005 Punica granatum HOM05D002372 ORTHO05D002592 2.1e-27 126.3 172 45.3
PGR142G2817 Punica granatum HOM05D002372 ORTHO05D002592 2.1e-27 126.3 172 45.3
ATR0208G008 Amborella trichopoda HOM05D002372 ORTHO05D002592 2.7e-27 125.9 174 44.8
ECA240G3850 Erigeron canadensis HOM05D002372 ORTHO05D002592 2.7e-27 125.9 172 43.6
Lalb_Chr05g0210771 Lupinus albus HOM05D002372 ORTHO05D002592 2.7e-27 125.9 172 43.0
Sabra09G0069100 Salix brachista HOM05D002372 ORTHO05D002592 3.5e-27 125.6 174 46.6
AT3G19590 Arabidopsis thaliana HOM05D002372 ORTHO05D002592 4.6e-27 125.2 174 44.8
Carub.0003s1943 Capsella rubella HOM05D002372 ORTHO05D002592 4.6e-27 125.2 174 44.8
TWI14G0004 Tripterygium wilfordii HOM05D002372 ORTHO05D002592 4.6e-27 125.2 172 44.8
Ah.09g231880 Amaranthus hybridus HOM05D002372 ORTHO05D002592 6.0e-27 124.8 171 44.4
AL1G57460 Arabidopsis lyrata HOM05D002372 ORTHO05D002592 6.0e-27 124.8 171 43.3
AUR62034087 Chenopodium quinoa HOM05D002372 ORTHO05D002592 6.0e-27 124.8 173 45.1
Thhalv10011632m.g Eutrema salsugineum HOM05D002372 ORTHO05D002592 7.9e-27 124.4 171 42.7
AT1G49910 Arabidopsis thaliana HOM05D002372 ORTHO05D002592 1.3e-26 123.6 171 42.7
Os03g0448600 Oryza sativa ssp. japonica HOM05D002372 ORTHO05D002592 1.3e-26 123.6 174 43.1
Lsat_1_v5_gn_9_111820 Lactuca sativa HOM05D002372 ORTHO05D002592 1.8e-26 123.2 172 45.3
CARHR095040 Cardamine hirsuta HOM05D002372 ORTHO05D002592 2.3e-26 122.9 173 44.5
Oeu037278.2 Olea europaea HOM05D002372 ORTHO05D002592 2.3e-26 122.9 184 42.4
TAR628G1237 Trochodendron aralioides HOM05D002372 ORTHO05D002592 2.3e-26 122.9 174 45.4
DCAR_003608 Daucus carota HOM05D002372 ORTHO05D002592 3.0e-26 122.5 174 44.8
Nn2g15747 Nelumbo nucifera HOM05D002372 ORTHO05D002592 3.9e-26 122.1 177 44.6
MBI16_g22909_MAGBIO Magnolia biondii HOM05D002372 ORTHO05D002592 5.1e-26 121.7 174 44.3
Carub.0001s3912 Capsella rubella HOM05D002372 ORTHO05D002592 6.7e-26 121.3 171 42.1
SGA_v2.0_scaffold32G13002 Striga asiatica HOM05D002372 ORTHO05D002592 8.7e-26 120.9 185 41.1
CDE01G0365 Ceratophyllum demersum HOM05D002372 ORTHO05D002592 1.5e-25 120.2 171 44.4
Lsat_1_v5_gn_7_85260 Lactuca sativa HOM05D002372 ORTHO05D002592 1.5e-25 120.2 172 41.9
Aa31LG10G4190 Aethionema arabicum HOM05D002372 ORTHO05D002592 1.9e-25 119.8 172 43.0
MBI16_g31592_MAGBIO Magnolia biondii HOM05D002372 ORTHO05D002592 1.9e-25 119.8 174 43.7
Sp1g36790 Schrenkiella parvula HOM05D002372 ORTHO05D002592 1.9e-25 119.8 171 42.1
Sp3g17630 Schrenkiella parvula HOM05D002372 ORTHO05D002592 1.9e-25 119.8 174 43.7
Aqoxy6G02690 Aquilegia oxysepala HOM05D002372 ORTHO05D002592 3.3e-25 119.0 169 43.8
BcaB04g20692 Brassica carinata HOM05D002372 ORTHO05D002592 3.3e-25 119.0 174 43.1
BcaC09g48924 Brassica carinata HOM05D002372 ORTHO05D002592 3.3e-25 119.0 174 43.1
A01p35090 Brassica napus HOM05D002372 ORTHO05D002592 3.3e-25 119.0 174 43.1
A08p03470 Brassica napus HOM05D002372 ORTHO05D002592 3.3e-25 119.0 171 42.1
C01p44520 Brassica napus HOM05D002372 ORTHO05D002592 3.3e-25 119.0 174 43.1
BolC1t04418H Brassica oleracea HOM05D002372 ORTHO05D002592 3.3e-25 119.0 174 43.1
BraA01t03591Z Brassica rapa HOM05D002372 ORTHO05D002592 3.3e-25 119.0 174 43.1
BraA08t32378Z Brassica rapa HOM05D002372 ORTHO05D002592 3.3e-25 119.0 171 42.1
Lj5C218T18 Lonicera japonica HOM05D002372 ORTHO05D002592 7.4e-25 117.9 212 38.2
Sed0014703 Sechium edule HOM05D002372 ORTHO05D002592 7.4e-25 117.9 174 44.3
C03p89380 Brassica napus HOM05D002372 ORTHO05D002592 1.3e-24 117.1 170 41.8
BolC3t21252H Brassica oleracea HOM05D002372 ORTHO05D002592 1.3e-24 117.1 170 41.8
TPR.G17616 Trifolium pratense HOM05D002372 ORTHO05D002592 2.8e-24 115.9 148 46.6
DCAR_029120 Daucus carota HOM05D002372 ORTHO05D002592 1.1e-23 114.0 173 42.8
AagrBONN_evm.TU.Sc2ySwM_362.2647 Anthoceros agrestis HOM05D002372 ORTHO05D002592 1.4e-23 113.6 171 42.7
PSO675G5028 Papaver somniferum HOM05D002372 ORTHO05D002592 3.1e-23 112.5 173 41.0
Sabra16G0184500 Salix brachista HOM05D002372 ORTHO05D002592 4.0e-23 112.1 226 36.7
Mapoly0036s0153 Marchantia polymorpha HOM05D002372 ORTHO05D002592 3.8e-21 105.5 168 42.3
PSO541G4953 Papaver somniferum HOM05D002372 ORTHO05D002592 1.1e-20 104.0 173 38.7
Pp3c12_14410 Physcomitrium patens HOM05D002372 ORTHO05D002592 7.1e-20 101.3 180 37.8
CBR_g633 Chara braunii HOM05D002372 ORTHO05D002592 7.9e-19 97.8 174 38.5
SMO116G0292 Selaginella moellendorffii HOM05D002372 ORTHO05D002592 1.0e-18 97.4 169 39.1
CBR_g50927 Chara braunii HOM05D002372 ORTHO05D002592 1.1e-17 94.0 174 37.4
Os07g0588500 Oryza sativa ssp. japonica HOM05D002372 ORTHO05D002592 3.3e-17 92.4 173 37.0
Pp3c10_19320 Physcomitrium patens HOM05D002372 ORTHO05D002592 6.2e-16 88.2 143 42.7
Lsat_1_v5_gn_8_136161 Lactuca sativa HOM05D002372 ORTHO05D002592 4.0e-15 85.5 80 52.5
Thhalv10021448m.g Eutrema salsugineum HOM05D002372 ORTHO05D002592 1.2e-14 84.0 113 46.0
FAN20G1170 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.5e-14 83.6 170 35.3
Hma1.2p1_1773F.1_g301720 Hydrangea macrophylla HOM05D002372 ORTHO05D002592 1.5e-14 83.6 118 44.1
AUR62042992 Chenopodium quinoa HOM05D002372 ORTHO05D002592 2.6e-14 82.8 114 43.0
Lsat_1_v5_gn_3_18161 Lactuca sativa HOM05D002372 ORTHO05D002592 3.4e-14 82.4 132 38.6
Sopen11g003510 Solanum pennellii HOM05D001491 ORTHO05D001134 1.4e-12 77.0 37 91.9
FAN07G0641 Fragaria x ananassa HOM05D002372 ORTHO05D002592 5.5e-12 75.1 168 32.1
Lsat_1_v5_gn_3_105841 Lactuca sativa HOM05D002372 ORTHO05D002592 5.5e-12 75.1 74 51.4
FAN15G0708 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.6e-11 73.6 57 61.4
Peaxi162Scf00016g02844 Petunia axillaris HOM05D002372 ORTHO05D002592 7.9e-11 71.2 88 44.3
Lsat_1_v5_gn_7_39920 Lactuca sativa HOM05D002314 ORTHO05D002538 4.3e-09 65.5 42 73.8
Lsat_1_v5_gn_6_59520 Lactuca sativa HOM05D002372 ORTHO05D002623 9.7e-09 64.3 41 73.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 6.3e-08 61.6 42 66.7
Pp3c11_23580 Physcomitrium patens HOM05D002372 ORTHO05D002592 2.4e-07 59.7 89 41.6
CAN.G135.60 Capsicum annuum HOM05D002372 ORTHO05D002592 5.3e-07 58.5 86 41.9
Pp3c7_2520 Physcomitrium patens HOM05D002372 ORTHO05D002592 2.0e-06 56.6 89 41.6


User provided reference genes

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