Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 7.2e-54 213.8 117 100.0
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 1.4e-52 209.5 117 98.3
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 4.5e-48 194.5 117 88.9
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 8.5e-47 190.3 117 87.2
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 4.7e-45 184.5 117 86.3
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 2.0e-32 142.5 81 95.1
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 2.8e-29 132.1 93 76.3
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 6.6e-23 110.9 122 50.0
Nitab4.5_0001780g0030 Nicotiana tabacum HOM05D006478 ORTHO05D008071 6.6e-23 110.9 74 79.7
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 4.3e-22 108.2 118 49.2
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 7.3e-22 107.5 115 55.7
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.2e-21 106.7 119 52.9
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 2.1e-21 105.9 112 50.0
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 2.8e-21 105.5 108 50.9
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 8.0e-21 104.0 119 52.1
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 8.9e-20 100.5 107 52.3
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 5.8e-19 97.8 122 44.3
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 7.5e-19 97.4 118 47.5
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 2.2e-18 95.9 117 47.0
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 2.2e-18 95.9 112 46.4
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 2.2e-18 95.9 117 47.9
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 2.9e-18 95.5 114 49.1
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 2.9e-18 95.5 115 44.3
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 2.9e-18 95.5 116 42.2
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 3.7e-18 95.1 116 49.1
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 8.3e-18 94.0 116 45.7
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 3.2e-17 92.0 122 43.4
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 4.1e-17 91.7 118 46.6
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 5.4e-17 91.3 117 46.2
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 7.0e-17 90.9 122 46.7
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 7.0e-17 90.9 119 47.9
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 1.2e-16 90.1 117 45.3
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.6e-16 89.7 119 40.3
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 1.6e-16 89.7 104 50.0
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 2.7e-16 89.0 122 44.3
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 3.5e-16 88.6 119 40.3
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 3.5e-16 88.6 122 44.3
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 4.6e-16 88.2 117 40.2
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 7.8e-16 87.4 116 44.8
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 1.0e-15 87.0 119 39.5
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.0e-15 87.0 115 40.0
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 3.0e-15 85.5 115 39.1
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 3.0e-15 85.5 117 44.4
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 5.1e-15 84.7 115 39.1
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 6.6e-15 84.3 107 38.3
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 6.6e-15 84.3 120 40.8
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 8.6e-15 84.0 109 45.0
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.5e-14 83.2 117 40.2
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 2.5e-14 82.4 113 46.0
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 4.3e-14 81.6 120 40.0
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 9.5e-14 80.5 115 38.3
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 1.6e-13 79.7 118 41.5
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 3.6e-13 78.6 127 37.0
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 3.6e-13 78.6 116 39.7
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 1.1e-12 77.0 118 38.1
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 1.1e-12 77.0 111 39.6
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 6.8e-12 74.3 124 41.1
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 1.2e-11 73.6 118 42.4
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.2e-11 73.6 107 44.9
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 1.5e-11 73.2 84 51.2
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 1.5e-11 73.2 120 40.8
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 2.0e-11 72.8 122 35.2
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 2.0e-11 72.8 97 41.2
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 2.0e-11 72.8 106 40.6
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 2.6e-11 72.4 116 37.1
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 9.9e-11 70.5 119 39.5
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 2.9e-10 68.9 102 40.2
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 2.9e-10 68.9 102 40.2
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 3.7e-10 68.6 116 37.9
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 3.7e-10 68.6 116 37.9
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 6.4e-10 67.8 117 35.9
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 6.4e-10 67.8 116 37.1
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 8.3e-10 67.4 93 40.9
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 8.3e-10 67.4 91 39.6
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 2.4e-09 65.9 119 35.3
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 3.2e-09 65.5 119 35.3
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 9.2e-09 63.9 114 34.2
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 2.1e-08 62.8 117 33.3
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 3.5e-08 62.0 114 32.5
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 3.5e-08 62.0 123 34.1
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 1.0e-07 60.5 114 31.6
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.0e-07 60.5 71 54.9
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 1.3e-07 60.1 114 30.7
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 1.3e-07 60.1 123 32.5
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 2.3e-07 59.3 114 31.6
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 2.3e-07 59.3 114 31.6
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 2.3e-07 59.3 114 33.3
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 3.0e-07 58.9 118 33.9
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 3.9e-07 58.5 114 30.7
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 5.1e-07 58.2 119 31.9
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 5.1e-07 58.2 119 35.3
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 8.6e-07 57.4 123 32.5
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 8.6e-07 57.4 118 33.9
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 1.1e-06 57.0 114 30.7
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 1.1e-06 57.0 114 30.7
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 1.1e-06 57.0 114 30.7
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.9e-06 56.2 81 34.6
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 5.6e-06 54.7 116 29.3
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 7.3e-06 54.3 85 36.5
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 9.5e-06 53.9 117 33.3


User provided reference genes

Program Settings