Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 7.4e-175 617.1 308 100.0
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 4.1e-173 611.3 308 99.0
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 1.3e-166 589.7 308 95.8
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 2.8e-158 562.0 308 89.6
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 9.1e-157 557.0 308 89.0
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 4.0e-152 541.6 308 87.3
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.7e-150 535.0 308 87.0
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 77.0
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 77.0
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.3e-136 489.2 309 76.4
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.5e-135 484.2 306 76.5
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 3.7e-134 481.9 310 74.5
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 6.4e-134 481.1 308 76.6
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 9.2e-133 477.2 306 74.8
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.0e-131 473.8 304 75.0
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.3e-131 473.4 306 74.8
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 2.3e-131 472.6 308 76.0
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 3.0e-131 472.2 306 72.2
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 3.9e-131 471.9 302 75.2
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 8.6e-131 470.7 306 75.5
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 1.1e-130 470.3 306 73.5
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.9e-130 469.5 307 74.3
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 2.5e-130 469.2 305 73.4
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.5e-130 469.2 306 71.6
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 2.5e-130 469.2 306 74.8
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 7.3e-130 467.6 306 73.5
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 7.3e-130 467.6 303 74.3
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 9.5e-130 467.2 306 73.2
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 8.1e-129 464.2 306 73.9
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 8.1e-129 464.2 310 73.9
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.4e-128 463.4 307 73.9
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 1.4e-128 463.4 306 73.5
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 5.2e-128 461.5 307 73.6
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 8.9e-128 460.7 305 72.1
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.5e-127 459.9 306 73.9
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 3.4e-127 458.8 306 72.5
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 4.4e-127 458.4 306 71.6
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 5.8e-127 458.0 310 72.9
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.8e-127 458.0 307 73.0
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 9.9e-127 457.2 307 74.6
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.3e-126 456.8 306 71.9
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.7e-126 456.4 307 72.6
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 2.9e-126 455.7 307 72.0
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 3.7e-126 455.3 319 69.9
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 4.9e-126 454.9 309 73.5
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 4.9e-126 454.9 305 72.1
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 6.4e-126 454.5 303 71.3
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.4e-125 453.4 307 71.0
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.4e-125 453.4 308 73.4
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 1.9e-125 453.0 307 73.0
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.4e-125 452.6 307 72.0
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 3.2e-125 452.2 306 71.2
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 4.1e-125 451.8 309 74.1
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 5.4e-125 451.4 305 71.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 7.1e-125 451.1 305 71.1
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.2e-124 450.3 306 71.2
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 1.6e-124 449.9 305 71.8
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.6e-124 449.9 306 71.2
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 2.1e-124 449.5 350 64.9
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 7.8e-124 447.6 317 72.2
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 3.0e-123 445.7 305 71.1
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 6.6e-123 444.5 307 69.4
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 8.6e-123 444.1 307 69.4
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.9e-122 443.0 307 69.1
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.9e-122 443.0 307 69.1
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.3e-122 442.2 305 68.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-122 441.4 325 69.8
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.2e-121 440.3 309 68.6
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.2e-121 440.3 307 69.4
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.2e-121 440.3 307 69.4
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 2.1e-121 439.5 309 68.3
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 4.7e-121 438.3 304 68.4
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 8.1e-121 437.6 309 68.0
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.1e-120 437.2 304 68.1
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 1.8e-120 436.4 304 68.4
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.4e-120 436.0 307 68.4
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 2.4e-120 436.0 305 69.5
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 6.8e-120 434.5 304 67.1
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.2e-119 433.7 305 67.9
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 2.0e-119 433.0 304 67.8
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 2.0e-119 433.0 304 67.8
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 7.6e-119 431.0 307 69.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.3e-118 430.3 328 61.6
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.3e-118 430.3 305 65.9
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.2e-118 429.5 323 66.3
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.2e-118 429.5 340 65.0
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.8e-118 428.7 305 65.9
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 3.8e-118 428.7 309 69.3
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 6.4e-118 427.9 306 68.6
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.9e-117 426.4 381 59.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.6e-116 423.3 275 74.5
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 6.6e-115 417.9 271 72.0
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.3e-114 415.2 302 65.6
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 2.2e-110 402.9 304 66.4
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 6.4e-110 401.4 302 64.6
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.4e-110 401.0 285 69.8
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.4e-109 400.2 311 64.6
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 2.7e-108 396.0 287 67.9
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.3e-107 393.7 240 79.2
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.6e-105 386.7 306 64.4
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 3.6e-105 385.6 245 77.6
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 3.4e-103 379.0 245 75.9
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 4.3e-98 362.1 305 60.3
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.3e-97 360.5 306 61.1
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 7.6e-95 351.3 241 68.0
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.0e-87 326.6 209 75.6
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 7.6e-87 324.7 304 55.6
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.4e-85 320.5 302 53.3
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 6.7e-83 311.6 211 70.1
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 1.5e-82 310.5 301 53.8
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.2e-79 300.8 304 53.3
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.0e-70 271.2 291 47.4
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.4e-58 229.2 148 74.3
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 1.8e-56 223.8 319 42.6
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.2e-55 221.1 180 56.1
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.6e-55 220.7 146 74.0
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.5e-53 214.2 290 39.3
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 2.4e-48 196.8 156 60.3
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.1e-40 171.4 184 53.3
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.2e-39 167.9 149 58.4
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 2.5e-37 160.2 149 57.0
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 3.9e-30 136.3 95 68.4
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 9.5e-29 131.7 96 66.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.8e-27 125.6 100 63.0
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.2e-20 102.4 67 76.1
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.0e-20 102.1 69 69.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.1e-19 101.7 64 73.4
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.0e-18 97.4 70 58.6
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 9.8e-18 95.1 59 74.6
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 1.0e-06 58.5 76 50.0


User provided reference genes

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