Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 2.8e-63 245.0 113 100.0
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 5.3e-62 240.7 113 98.2
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.5e-61 237.7 113 95.6
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.5e-56 222.6 112 87.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 2.6e-56 221.9 112 91.1
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.6e-56 221.9 110 89.1
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 5.7e-56 220.7 110 88.2
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.9e-51 205.7 113 82.3
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.6e-50 202.6 113 79.6
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 3.6e-50 201.4 111 79.3
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 4.7e-50 201.1 113 79.6
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.4e-49 199.5 113 79.6
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.8e-49 199.1 112 79.5
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.0e-49 198.4 111 77.5
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 4.0e-49 198.0 111 78.4
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.2e-48 196.4 113 76.1
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.2e-48 196.4 111 76.6
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.2e-48 196.4 112 78.6
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 2.6e-48 195.3 112 75.0
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 3.3e-48 194.9 113 77.0
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.4e-48 194.5 112 77.7
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 5.7e-48 194.1 112 75.0
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 7.5e-48 193.7 114 75.4
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 9.7e-48 193.4 111 76.6
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.3e-47 193.0 115 76.5
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.2e-47 192.2 111 73.9
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.8e-47 191.8 112 76.8
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 3.7e-47 191.4 112 76.8
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 6.3e-47 190.7 114 76.3
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 8.2e-47 190.3 112 75.0
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.2e-47 190.3 112 75.9
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.1e-46 189.9 110 77.3
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 1.1e-46 189.9 112 75.0
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 1.1e-46 189.9 113 73.5
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 1.4e-46 189.5 112 70.5
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.4e-46 189.5 112 75.0
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 4.1e-46 188.0 112 73.2
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 5.3e-46 187.6 113 71.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 5.3e-46 187.6 112 73.2
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 5.3e-46 187.6 112 75.0
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 7.0e-46 187.2 111 73.9
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 7.0e-46 187.2 112 74.1
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 9.1e-46 186.8 114 75.4
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 9.1e-46 186.8 113 72.6
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 4.5e-45 184.5 112 71.4
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.0e-44 183.3 103 76.7
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 1.0e-44 183.3 113 69.9
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.7e-44 182.6 112 73.2
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 2.2e-44 182.2 115 72.2
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 2.9e-44 181.8 113 74.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.8e-44 181.4 113 70.8
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.8e-44 181.4 111 73.9
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.8e-44 181.4 117 70.1
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.8e-44 181.4 119 71.4
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 5.0e-44 181.0 112 73.2
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 8.5e-44 180.3 112 72.3
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 8.5e-44 180.3 113 70.8
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.9e-43 179.1 110 69.1
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.9e-43 179.1 110 69.1
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 3.2e-43 178.3 116 70.7
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 3.2e-43 178.3 109 68.8
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 4.2e-43 177.9 112 71.4
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 7.2e-43 177.2 113 69.9
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 7.2e-43 177.2 113 69.9
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 9.4e-43 176.8 113 70.8
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 9.4e-43 176.8 114 70.2
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.2e-42 176.4 109 68.8
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.6e-42 176.0 114 69.3
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 1.6e-42 176.0 113 68.1
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 2.1e-42 175.6 114 70.2
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 2.1e-42 175.6 114 70.2
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 2.7e-42 175.3 110 70.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 4.7e-42 174.5 112 68.8
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.7e-42 174.5 116 69.0
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 4.7e-42 174.5 113 69.9
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 6.1e-42 174.1 115 67.8
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 8.0e-42 173.7 112 69.6
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.0e-41 171.8 116 68.1
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.0e-41 171.8 112 67.0
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 3.0e-41 171.8 112 67.0
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.8e-41 170.2 111 68.5
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 1.5e-40 169.5 114 68.4
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.5e-40 169.5 111 67.6
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 2.0e-40 169.1 114 68.4
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 2.0e-40 169.1 118 65.3
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 2.6e-40 168.7 114 67.5
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 3.4e-40 168.3 114 65.8
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 3.4e-40 168.3 114 66.7
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 3.4e-40 168.3 114 66.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 3.4e-40 168.3 114 66.7
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 3.4e-40 168.3 114 66.7
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 4.4e-40 167.9 114 67.5
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 4.4e-40 167.9 114 68.4
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.4e-40 167.9 114 64.9
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.4e-40 167.9 116 65.5
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 9.8e-40 166.8 114 67.5
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 9.8e-40 166.8 114 66.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 9.8e-40 166.8 112 66.1
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.7e-39 166.0 112 63.4
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.7e-39 166.0 114 65.8
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.7e-39 166.0 112 66.1
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.2e-39 165.6 114 66.7
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.2e-39 165.6 114 65.8
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.2e-39 165.6 114 66.7
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 2.2e-39 165.6 126 61.1
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.2e-39 165.6 126 61.1
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.2e-39 165.6 111 65.8
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-39 165.2 116 65.5
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 3.7e-39 164.9 112 64.3
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 4.8e-39 164.5 114 65.8
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 6.3e-39 164.1 111 64.9
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.3e-39 164.1 114 67.5
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 6.3e-39 164.1 114 65.8
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 8.3e-39 163.7 114 65.8
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 8.3e-39 163.7 114 65.8
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.4e-38 162.9 112 64.3
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.1e-38 161.4 114 63.2
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.0e-38 160.6 116 64.7
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.2e-37 159.8 111 62.2
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.0e-37 159.1 113 66.4
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.0e-36 156.8 112 63.4
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 5.0e-36 154.5 114 62.3
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.6e-34 149.4 110 58.2
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.6e-34 149.4 112 59.8
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 1.6e-34 149.4 115 59.1
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 8.0e-34 147.1 114 56.1
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.0e-33 144.8 110 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 2.2e-31 139.0 113 55.8
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.7e-31 138.3 111 57.7
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 8.3e-31 137.1 95 65.3
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.8e-30 136.0 113 54.0
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.4e-30 135.6 108 56.5
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.5e-27 126.3 115 48.7
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.5e-27 126.3 111 51.4
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.0e-25 120.2 111 48.6
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 5.9e-21 104.4 114 50.9
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 7.8e-21 104.0 69 68.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.8e-17 92.8 109 39.4
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 5.8e-16 87.8 82 54.9
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.9e-15 84.7 97 46.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.9e-15 84.7 97 46.4
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 7.0e-14 80.9 74 55.4
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.0e-09 65.1 56 55.4
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-06 57.0 58 48.3


User provided reference genes

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