Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 1.9e-32 142.1 62 100.0
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 1.9e-32 142.1 62 100.0
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 5.6e-32 140.6 61 100.0
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 9.6e-32 139.8 62 98.4
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 9.6e-32 139.8 62 98.4
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.6e-31 139.0 62 96.8
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.8e-31 138.3 61 98.4
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 8.1e-31 136.7 62 95.2
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 8.1e-31 136.7 62 95.2
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 8.1e-31 136.7 62 95.2
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 8.1e-31 136.7 62 95.2
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 8.1e-31 136.7 62 95.2
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 8.1e-31 136.7 62 95.2
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 8.1e-31 136.7 62 93.5
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.1e-30 136.3 62 93.5
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 93.5
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 93.5
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.4e-30 136.0 62 95.2
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.8e-30 135.6 62 93.5
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 2.4e-30 135.2 60 96.7
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 93.5
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 93.5
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 93.5
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 93.5
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 91.9
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 93.5
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 93.5
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 91.9
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 91.9
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 91.9
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 91.9
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 91.9
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 93.5
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 91.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 5.3e-30 134.0 62 91.9
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 6.9e-30 133.7 62 91.9
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 9.0e-30 133.3 62 91.9
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 9.0e-30 133.3 62 90.3
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 9.0e-30 133.3 62 91.9
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 9.0e-30 133.3 62 91.9
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 1.2e-29 132.9 62 91.9
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.2e-29 132.9 62 91.9
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.2e-29 132.9 62 91.9
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.5e-29 132.5 62 91.9
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.5e-29 132.5 62 91.9
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 1.5e-29 132.5 62 91.9
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.5e-29 132.5 62 91.9
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 2.0e-29 132.1 62 90.3
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.0e-29 132.1 62 90.3
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-29 132.1 62 91.9
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-29 132.1 62 91.9
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.0e-29 132.1 62 91.9
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.0e-29 132.1 62 90.3
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 2.6e-29 131.7 62 90.3
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 2.6e-29 131.7 62 90.3
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 2.6e-29 131.7 62 91.9
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 3.4e-29 131.3 62 88.7
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 3.4e-29 131.3 62 91.9
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 88.7
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 4.5e-29 131.0 62 90.3
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 5.8e-29 130.6 62 88.7
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 5.8e-29 130.6 62 90.3
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 5.8e-29 130.6 62 88.7
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 5.8e-29 130.6 62 88.7
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.6e-29 130.2 62 90.3
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.6e-29 130.2 62 90.3
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 7.6e-29 130.2 62 90.3
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 9.9e-29 129.8 62 90.3
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 1.3e-28 129.4 62 87.1
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 1.3e-28 129.4 62 87.1
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.7e-28 129.0 62 88.7
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.9e-28 128.3 62 88.7
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 3.8e-28 127.9 62 87.1
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 3.8e-28 127.9 62 87.1
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 9.3e-27 123.2 57 91.2
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.1e-26 122.1 87 66.7
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 4.6e-26 120.9 82 68.3
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 3.0e-25 118.2 83 67.5
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 6.7e-25 117.1 55 92.7
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 6.7e-25 117.1 50 98.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 8.7e-25 116.7 58 84.5
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 2.1e-23 112.1 50 94.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 3.7e-23 111.3 50 94.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-22 109.4 50 92.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.3e-22 107.5 54 87.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 9.0e-22 106.7 49 89.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 1.7e-20 102.4 62 72.6
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.9e-20 101.7 61 70.5
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.5e-19 98.6 62 66.1
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.5e-19 98.6 62 66.1
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 4.2e-19 97.8 62 67.7
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 9.0e-14 80.1 38 92.1
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.5e-13 79.3 60 55.0
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 6.3e-07 57.4 29 82.8
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 3.1e-06 55.1 23 91.3


User provided reference genes

Program Settings