Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 5.3e-190 667.5 341 100.0
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 1.5e-189 666.0 341 99.7
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.1e-182 641.7 341 96.2
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.1e-163 580.1 342 88.9
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.3e-148 530.0 349 82.2
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.1e-123 447.2 344 68.6
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.7e-122 441.8 348 68.1
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 4.4e-120 435.3 344 67.4
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.8e-120 434.9 344 67.7
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.9e-119 432.6 347 68.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.9e-118 429.9 344 65.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 2.4e-118 429.5 344 66.0
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 5.4e-118 428.3 344 67.2
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.1e-117 426.4 350 64.9
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 3.9e-116 422.2 344 65.1
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 5.1e-116 421.8 344 65.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.1e-115 420.6 344 66.0
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.6e-114 416.8 342 66.1
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 4.8e-114 415.2 345 64.6
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.2e-114 414.8 344 65.4
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 8.1e-114 414.5 343 64.1
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 3.1e-113 412.5 344 66.6
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 1.2e-112 410.6 344 65.1
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.4e-112 409.1 344 64.0
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 5.8e-112 408.3 344 65.7
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.7e-111 406.8 346 64.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.2e-111 406.4 337 64.7
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.2e-111 406.4 344 63.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 8.4e-111 404.4 361 61.5
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.1e-110 404.1 348 62.1
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.4e-110 403.7 346 64.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.4e-110 402.9 346 64.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 4.2e-110 402.1 345 62.6
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.4e-110 401.7 343 63.0
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 2.7e-109 399.4 347 65.1
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.5e-109 399.1 348 62.9
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.3e-108 397.1 346 63.9
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.9e-108 395.6 344 62.8
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.1e-108 395.2 343 62.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.9e-107 393.3 341 62.2
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.5e-107 392.9 347 64.8
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.3e-107 392.1 343 61.8
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 1.6e-106 390.2 346 61.3
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.8e-106 388.7 345 62.3
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 8.1e-106 387.9 345 62.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.1e-105 387.5 356 63.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.4e-105 387.1 351 61.0
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.8e-105 386.7 345 62.6
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.4e-105 386.3 345 62.6
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.4e-105 386.3 345 60.9
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.5e-104 383.6 344 61.0
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 1.5e-104 383.6 344 63.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 2.6e-104 382.9 397 55.9
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 5.8e-104 381.7 345 62.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 9.9e-104 380.9 345 61.7
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.2e-103 379.8 345 60.6
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.9e-103 379.4 344 62.2
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.4e-103 378.3 344 61.3
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.9e-102 376.7 347 61.7
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 7.1e-102 374.8 346 61.3
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 9.3e-102 374.4 348 62.6
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.6e-101 373.6 347 61.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.1e-101 373.2 347 61.1
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 2.1e-101 373.2 296 68.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.7e-101 372.9 344 60.8
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 3.5e-101 372.5 344 62.8
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 3.5e-101 372.5 344 61.3
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 3.5e-101 372.5 414 53.1
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 6.0e-101 371.7 348 61.8
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.0e-100 370.9 349 61.0
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.0e-100 370.9 344 61.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.8e-100 370.2 344 60.5
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.8e-100 370.2 409 53.1
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.3e-100 369.8 345 59.7
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 3.0e-100 369.4 347 61.1
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 5.1e-100 368.6 348 60.9
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.5e-99 367.1 348 60.6
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 3.7e-98 362.5 346 59.8
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 6.2e-98 361.7 344 58.1
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.1e-97 360.9 349 60.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.4e-97 359.8 389 55.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.0e-97 357.8 350 57.4
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-95 354.4 351 57.8
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 3.8e-95 352.4 335 60.0
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.2e-93 347.4 346 56.6
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.6e-93 347.1 347 59.7
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.1e-93 346.7 348 57.8
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 6.0e-93 345.1 349 58.2
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.3e-90 337.4 345 56.8
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 3.7e-90 335.9 341 55.4
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.3e-90 335.1 347 56.5
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.4e-88 329.3 353 56.1
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 5.9e-88 328.6 349 55.9
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 7.6e-88 328.2 347 55.3
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.7e-87 327.0 344 54.7
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.2e-87 326.6 345 54.2
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.0e-87 325.5 344 55.2
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.2e-86 322.8 346 52.9
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 5.5e-86 322.0 346 54.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.2e-86 321.6 348 53.7
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 7.2e-86 321.6 346 54.6
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 9.3e-86 321.2 347 55.3
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 9.3e-86 321.2 322 57.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.2e-85 320.9 346 54.6
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.2e-85 320.9 346 54.6
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 4.6e-85 318.9 345 55.4
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.9e-85 318.2 349 53.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.0e-84 317.8 344 53.5
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.3e-84 317.4 259 66.0
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.3e-84 317.4 344 55.5
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 3.0e-84 316.2 343 55.1
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 5.1e-84 315.5 354 53.4
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.5e-83 313.2 344 53.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 5.7e-83 312.0 250 68.4
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.2e-82 310.1 348 54.3
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 4.8e-82 308.9 353 52.4
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 8.2e-82 308.1 281 58.7
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.2e-80 304.3 348 50.6
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.2e-80 304.3 346 54.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.6e-80 303.1 352 53.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.3e-79 300.8 348 53.2
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.3e-79 300.8 349 49.3
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.7e-79 300.4 345 52.8
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.7e-79 300.4 347 53.3
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.9e-79 299.7 342 52.9
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.9e-79 299.7 342 52.9
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.1e-78 297.7 343 51.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 4.2e-78 295.8 342 52.9
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.2e-78 295.8 343 53.1
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 4.2e-78 295.8 271 62.7
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 7.2e-78 295.0 348 52.9
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 7.2e-78 295.0 352 52.0
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-77 293.9 344 52.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.6e-77 293.9 344 52.0
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 3.6e-77 292.7 342 52.0
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.6e-77 292.7 350 51.1
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-76 290.8 348 50.6
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.8e-76 290.4 347 51.3
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 8.8e-76 288.1 352 49.4
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.1e-75 287.7 348 50.6
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 5.7e-75 285.4 346 50.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.5e-70 270.0 278 57.6
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.0e-63 248.1 341 48.7
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.2e-59 234.6 252 52.4
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 5.7e-59 232.3 209 61.7
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.3e-52 210.3 336 43.5
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.2e-40 171.4 338 38.5
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.7e-37 159.5 250 41.6
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.5e-30 137.9 409 29.6
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 6.4e-26 122.5 154 48.7
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 6.2e-21 105.9 155 43.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 6.8e-20 102.4 236 35.2
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.5e-14 84.7 87 54.0
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.1e-13 80.9 165 33.3
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 3.6e-13 80.1 178 37.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 8.1e-13 79.0 148 35.1
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 6.4e-10 69.3 367 24.5
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 2.3e-07 60.8 186 29.6
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 2.5e-06 57.4 285 22.5
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 5.6e-06 56.2 237 24.5


User provided reference genes

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