Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.3e-105 386.3 189 100.0
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.3e-105 386.3 189 100.0
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 7.2e-104 380.6 189 97.9
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 6.8e-86 320.9 196 80.6
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 6.3e-84 314.3 175 86.9
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 3.1e-83 312.0 195 77.9
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 7.7e-82 307.4 192 77.6
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 7.7e-82 307.4 192 77.6
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 7.7e-82 307.4 192 77.6
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.0e-81 307.0 198 76.8
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.9e-80 302.8 195 80.0
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 2.5e-80 302.4 190 78.4
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 7.2e-80 300.8 186 79.6
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 1.2e-79 300.1 193 75.1
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.1e-79 299.3 195 79.5
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.1e-79 299.3 189 78.3
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 2.1e-79 299.3 194 75.8
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 2.8e-79 298.9 195 79.5
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.8e-79 298.9 195 79.5
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 6.1e-79 297.7 196 77.0
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 6.1e-79 297.7 195 79.0
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 8.0e-79 297.4 194 77.8
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.0e-78 297.0 195 79.0
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-78 296.6 195 79.0
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.8e-78 296.2 196 78.1
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.8e-78 296.2 191 76.4
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.3e-78 295.8 192 79.2
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.3e-78 295.8 192 79.2
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 3.0e-78 295.4 193 77.7
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 5.2e-78 294.7 198 75.8
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 6.8e-78 294.3 193 73.6
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 8.9e-78 293.9 196 76.5
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 8.9e-78 293.9 193 76.2
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 1.2e-77 293.5 191 77.0
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.5e-77 293.1 197 77.7
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 2.0e-77 292.7 192 78.6
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 2.0e-77 292.7 198 74.2
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 3.4e-77 292.0 198 74.7
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 3.4e-77 292.0 194 76.3
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 3.4e-77 292.0 193 79.8
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 3.4e-77 292.0 201 75.6
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 4.4e-77 291.6 197 76.6
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 5.7e-77 291.2 199 77.4
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 5.7e-77 291.2 194 78.4
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 5.7e-77 291.2 195 77.4
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 7.5e-77 290.8 194 77.8
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 9.8e-77 290.4 195 77.9
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.7e-76 289.7 196 75.5
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.8e-76 288.9 191 73.3
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 6.3e-76 287.7 193 74.6
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 1.1e-75 287.0 193 76.2
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 1.1e-75 287.0 167 82.6
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 1.4e-75 286.6 194 76.3
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.8e-75 286.2 196 73.5
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 3.1e-75 285.4 193 74.1
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 3.1e-75 285.4 197 74.1
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 3.1e-75 285.4 199 76.4
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.0e-74 282.7 184 74.5
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 2.7e-74 282.3 193 73.6
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 2.7e-74 282.3 202 73.8
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 3.5e-74 282.0 199 75.9
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 3.5e-74 282.0 199 75.9
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 5.9e-74 281.2 204 72.5
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.7e-73 279.6 196 72.4
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 6.6e-73 277.7 195 73.8
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 1.5e-72 276.6 175 80.0
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 2.5e-72 275.8 175 77.1
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 2.5e-72 275.8 164 86.6
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 9.5e-72 273.9 207 68.1
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 2.1e-71 272.7 194 73.2
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 3.6e-71 271.9 192 71.9
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.3e-70 269.2 172 75.6
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 3.7e-68 261.9 175 76.6
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.4e-67 259.2 187 69.5
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.4e-67 259.2 187 69.5
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 5.4e-67 258.1 195 67.2
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 7.0e-67 257.7 203 70.0
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 7.0e-67 257.7 173 72.8
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.6e-66 255.0 178 69.1
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 6.0e-66 254.6 172 72.7
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 3.0e-65 252.3 174 71.8
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 8.6e-65 250.8 196 69.4
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 3.3e-64 248.8 202 66.8
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 4.3e-64 248.4 199 67.3
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 4.3e-64 248.4 203 67.0
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 4.3e-64 248.4 203 67.0
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 4.3e-64 248.4 203 67.0
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.6e-64 248.1 206 65.0
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 9.5e-64 247.3 199 65.8
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 3.6e-63 245.4 199 66.8
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 6.2e-63 244.6 199 66.8
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 2.3e-62 242.7 204 65.2
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.3e-62 242.7 206 65.0
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.3e-62 242.7 206 65.0
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 3.1e-62 242.3 208 63.9
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 1.1e-59 233.8 205 62.4
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.9e-59 233.0 168 72.6
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 3.2e-59 232.3 156 73.7
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 4.9e-52 208.4 104 94.2
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 5.4e-51 204.9 104 93.3
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 3.5e-50 202.2 191 60.2
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 1.9e-48 196.4 173 55.5
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.1e-46 190.7 181 53.0
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.4e-43 180.3 143 65.7
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.4e-43 179.5 178 54.5
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 7.1e-43 177.9 171 50.9
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.3e-41 173.7 173 49.1
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 4.3e-40 168.7 97 86.6
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.3e-35 151.0 176 50.6
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 2.5e-32 142.9 118 59.3
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 6.7e-25 118.2 132 52.3
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 2.7e-18 96.3 63 71.4
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.4e-16 88.2 62 69.4
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 3.8e-12 75.9 56 71.4
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.1e-11 74.3 46 76.1
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.1e-06 56.2 33 75.8


User provided reference genes

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