Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005360.2 Solanum lycopersicum HOM05D006928 ORTHO05D008618 2.0e-43 178.7 93 100.0
Sopen11g001370 Solanum pennellii HOM05D006928 ORTHO05D008618 2.0e-43 178.7 93 100.0
Nitab4.5_0010284g0020 Nicotiana tabacum HOM05D006928 ORTHO05D008618 4.4e-38 161.0 90 92.2
Nitab4.5_0002064g0030 Nicotiana tabacum HOM05D006928 ORTHO05D008618 9.8e-38 159.8 90 91.1
Peaxi162Scf00025g02217 Petunia axillaris HOM05D006928 ORTHO05D008618 3.2e-36 154.8 90 86.7
Cc00_g00790 Coffea canephora HOM05D006928 ORTHO05D008618 3.0e-34 148.3 90 82.2
Cc07_g17360 Coffea canephora HOM05D006928 ORTHO05D008618 3.0e-34 148.3 90 82.2
COL.COLO4_22417 Corchorus olitorius HOM05D006928 ORTHO05D008618 8.6e-34 146.7 90 83.3
Prupe.6G162900 Prunus persica HOM05D006928 ORTHO05D008618 2.5e-33 145.2 90 80.0
Dinv09934 Davidia involucrata HOM05D006928 ORTHO05D008618 5.6e-33 144.1 90 80.0
PGR119G2472 Punica granatum HOM05D006928 ORTHO05D008618 7.3e-33 143.7 89 80.9
Cfa002868 Carpinus fangiana HOM05D006928 ORTHO05D008618 9.5e-33 143.3 84 84.5
RcHm_v2.0_Chr2g0119151 Rosa chinensis HOM05D006928 ORTHO05D008618 1.2e-32 142.9 90 82.2
Psat7g048720 Pisum sativum HOM05D006928 ORTHO05D008618 1.6e-32 142.5 90 78.9
Actinidia17615 Actinidia chinensis HOM05D006928 ORTHO05D008618 4.7e-32 141.0 90 80.0
Glyma.05G188300 Glycine max HOM05D006928 ORTHO05D008618 4.7e-32 141.0 90 80.0
Thecc.01G120800 Theobroma cacao HOM05D006928 ORTHO05D008618 6.2e-32 140.6 84 83.3
MSTRG.2691 Avicennia marina HOM05D006928 ORTHO05D008618 8.1e-32 140.2 90 80.0
CANSAT01G1375 Cannabis sativa HOM05D006928 ORTHO05D008618 8.1e-32 140.2 90 77.8
Glyma.08G146400 Glycine max HOM05D006928 ORTHO05D008618 8.1e-32 140.2 90 78.9
Lj4g0006915 Lotus japonicus HOM05D006928 ORTHO05D008618 1.4e-31 139.4 90 76.7
Manes.12G150300 Manihot esculenta HOM05D006928 ORTHO05D008618 1.4e-31 139.4 90 77.8
CSS0007569 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 1.8e-31 139.0 84 83.3
CSS0018620 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 1.8e-31 139.0 84 83.3
Sabra16G0195000 Salix brachista HOM05D006928 ORTHO05D008618 1.8e-31 139.0 90 76.7
TPR.G2179 Trifolium pratense HOM05D006928 ORTHO05D008618 1.8e-31 139.0 90 76.7
MD15G1343100 Malus domestica HOM05D006928 ORTHO05D008618 2.3e-31 138.7 90 77.8
Phvul.002G269100 Phaseolus vulgaris HOM05D006928 ORTHO05D008618 2.3e-31 138.7 90 77.8
Eucgr.I00245 Eucalyptus grandis HOM05D006928 ORTHO05D008618 3.1e-31 138.3 90 77.8
HanXRQChr15g0471661 Helianthus annuus HOM05D006928 ORTHO05D008618 3.1e-31 138.3 90 74.4
GSVIVG01026587001 Vitis vinifera HOM05D006928 ORTHO05D008618 3.1e-31 138.3 90 77.8
CiPaw.04G083900 Carya illinoinensis HOM05D006928 ORTHO05D008618 4.0e-31 137.9 90 77.8
Gohir.A02G138100 Gossypium hirsutum HOM05D006928 ORTHO05D008618 4.0e-31 137.9 90 78.9
Gohir.D03G048800 Gossypium hirsutum HOM05D006928 ORTHO05D008618 4.0e-31 137.9 90 78.9
Gorai.003G050100 Gossypium raimondii HOM05D006928 ORTHO05D008618 4.0e-31 137.9 90 78.9
ECA238G4197 Erigeron canadensis HOM05D006928 ORTHO05D008618 6.8e-31 137.1 88 77.3
Potri.001G309200 Populus trichocarpa HOM05D006928 ORTHO05D008618 6.8e-31 137.1 90 76.7
FAN23G1796 Fragaria x ananassa HOM05D006928 ORTHO05D008618 8.9e-31 136.7 90 78.9
FAN28G2803 Fragaria x ananassa HOM05D006928 ORTHO05D008618 8.9e-31 136.7 90 78.9
DCAR_027258 Daucus carota HOM05D006928 ORTHO05D008618 1.5e-30 136.0 89 79.8
FvH4_1g23590 Fragaria vesca HOM05D006928 ORTHO05D008618 2.0e-30 135.6 90 77.8
FAN19G2906 Fragaria x ananassa HOM05D006928 ORTHO05D008618 2.0e-30 135.6 90 77.8
Ciclev10026852m.g Citrus clementina HOM05D006928 ORTHO05D008618 3.4e-30 134.8 82 80.5
Duzib187G1761 Durio zibethinus HOM05D006928 ORTHO05D008618 3.4e-30 134.8 90 75.6
Duzib264G0933 Durio zibethinus HOM05D006928 ORTHO05D008618 3.4e-30 134.8 89 77.5
Lalb_Chr12g0203321 Lupinus albus HOM05D006928 ORTHO05D008618 3.4e-30 134.8 87 78.2
Hund03424 Selenicereus undatus HOM05D006928 ORTHO05D008618 4.4e-30 134.4 83 79.5
CsaV3_2G018080 Cucumis sativus L. HOM05D006928 ORTHO05D008618 5.8e-30 134.0 91 76.9
Sc16g0003960 Simmondsia chinensis HOM05D006928 ORTHO05D008618 5.8e-30 134.0 89 76.4
EL10Ac6g15253 Beta vulgaris HOM05D006928 ORTHO05D008618 7.5e-30 133.7 90 75.6
CAN.G249.11 Capsicum annuum HOM05D006928 ORTHO05D008618 7.5e-30 133.7 73 93.2
Nn1g06098 Nelumbo nucifera HOM05D006928 ORTHO05D008618 7.5e-30 133.7 82 78.0
Sed0020530 Sechium edule HOM05D006928 ORTHO05D008618 7.5e-30 133.7 91 76.9
TWI75G0630 Tripterygium wilfordii HOM05D006928 ORTHO05D008618 7.5e-30 133.7 90 75.6
Aqoxy3G02632 Aquilegia oxysepala HOM05D006928 ORTHO05D008618 9.8e-30 133.3 88 76.1
ClCG02G000690 Citrullus lanatus HOM05D006928 ORTHO05D008618 9.8e-30 133.3 91 75.8
TAR381G0700 Trochodendron aralioides HOM05D006928 ORTHO05D008618 9.8e-30 133.3 82 79.3
Lsat_1_v5_gn_2_66720 Lactuca sativa HOM05D006928 ORTHO05D008618 1.7e-29 132.5 87 75.9
Atru.chr4.541 Acer truncatum HOM05D006928 ORTHO05D008618 6.4e-29 130.6 90 73.3
AUR62003624 Chenopodium quinoa HOM05D006928 ORTHO05D008618 6.4e-29 130.6 90 73.3
THA.LOC104818466 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 2.4e-28 128.6 90 73.3
Carub.0006s0825 Capsella rubella HOM05D006928 ORTHO05D008618 5.4e-28 127.5 93 69.9
Migut.H01113 Erythranthe guttata HOM05D006928 ORTHO05D008618 7.1e-28 127.1 94 71.3
PSO541G1601 Papaver somniferum HOM05D006928 ORTHO05D008618 7.1e-28 127.1 90 72.2
MBI09_g18622_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 9.2e-28 126.7 90 70.0
MBI09_g20115_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 9.2e-28 126.7 90 70.0
Sp6g33580 Schrenkiella parvula HOM05D006928 ORTHO05D008618 1.2e-27 126.3 82 74.4
THA.LOC104799431 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 2.1e-27 125.6 85 72.9
BcaB04g19985 Brassica carinata HOM05D006928 ORTHO05D008618 3.5e-27 124.8 77 77.9
PSO675G6866 Papaver somniferum HOM05D006928 ORTHO05D008618 3.5e-27 124.8 90 71.1
AL6G20240 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 4.6e-27 124.4 80 76.2
Thhalv10005190m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 7.8e-27 123.6 77 76.6
BcaB08g37169 Brassica carinata HOM05D006928 ORTHO05D008618 1.0e-26 123.2 85 71.8
A10p27630 Brassica napus HOM05D006928 ORTHO05D008618 1.0e-26 123.2 85 71.8
C09p67690 Brassica napus HOM05D006928 ORTHO05D008618 1.0e-26 123.2 85 71.8
BolC9t59531H Brassica oleracea HOM05D006928 ORTHO05D008618 1.0e-26 123.2 85 71.8
Thhalv10015138m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 1.0e-26 123.2 82 73.2
Aa31LG1G17250 Aethionema arabicum HOM05D006928 ORTHO05D008618 1.3e-26 122.9 81 74.1
AT5G09830 Arabidopsis thaliana HOM05D006928 ORTHO05D008618 1.3e-26 122.9 80 73.8
BraA09t36529Z Brassica rapa HOM05D006928 ORTHO05D008618 1.3e-26 122.9 76 77.6
AL8G42110 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 1.7e-26 122.5 92 70.7
BraA10t44815Z Brassica rapa HOM05D006928 ORTHO05D008618 3.0e-26 121.7 85 70.6
Rhsim08G0003500 Rhododendron simsii HOM05D002612 ORTHO05D008618 3.0e-26 121.7 76 81.6
Sp2g27750 Schrenkiella parvula HOM05D006928 ORTHO05D008618 5.1e-26 120.9 81 72.8
CDE12G0365 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 1.1e-25 119.8 89 66.3
BolC9t53907H Brassica oleracea HOM05D006928 ORTHO05D008618 1.5e-25 119.4 87 67.8
Pp3c4_15580 Physcomitrium patens HOM05D006928 ORTHO05D008618 1.5e-25 119.4 89 65.2
QL06p051863 Quercus lobata HOM05D006928 ORTHO05D008618 1.9e-25 119.0 75 80.0
Actinidia26282 Actinidia chinensis HOM05D006928 ORTHO05D008618 4.3e-25 117.9 84 71.4
CARHR278670 Cardamine hirsuta HOM05D006928 ORTHO05D008618 4.3e-25 117.9 86 69.8
SMO351G0462 Selaginella moellendorffii HOM05D006928 ORTHO05D008618 1.2e-24 116.3 90 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3776 Anthoceros agrestis HOM05D006928 ORTHO05D008618 1.6e-24 115.9 87 66.7
Carub.0008s2549 Capsella rubella HOM05D006928 ORTHO05D008618 2.1e-24 115.5 84 70.2
Haze_25192 Corylus avellana HOM05D006928 ORTHO05D008618 3.6e-24 114.8 68 82.4
TAR376G0498 Trochodendron aralioides HOM05D006928 ORTHO05D008618 4.7e-24 114.4 77 76.6
Cpa.g.sc1003.1 Carica papaya HOM05D006928 ORTHO05D008618 6.2e-24 114.0 73 76.7
Haze_25197 Corylus avellana HOM05D006928 ORTHO05D008618 6.2e-24 114.0 68 80.9
AUR62017933 Chenopodium quinoa HOM05D006928 ORTHO05D008618 8.1e-24 113.6 73 78.1
Haze_25196 Corylus avellana HOM05D006928 ORTHO05D008618 1.1e-23 113.2 67 82.1
BcaC04g23298 Brassica carinata HOM05D006928 ORTHO05D008618 1.4e-23 112.8 96 62.5
SGA_v2.0_scaffold137G35109 Striga asiatica HOM05D006928 ORTHO05D008618 5.2e-23 110.9 76 72.4
Medtr8g092690 Medicago truncatula HOM05D006928 ORTHO05D008618 6.8e-23 110.5 73 74.0
Ah.03g146570 Amaranthus hybridus HOM05D006928 ORTHO05D008618 2.0e-22 109.0 73 75.3
HPP92_027450 Vanilla planifolia HOM05D006928 ORTHO05D008618 2.6e-22 108.6 82 63.4
CDE04G1901 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 3.4e-22 108.2 94 61.7
Mapoly0023s0156 Marchantia polymorpha HOM05D006928 ORTHO05D008618 3.4e-22 108.2 90 62.2
unitig_0.g37 Utricularia gibba HOM05D006928 ORTHO05D008618 4.4e-22 107.8 66 78.8
SalBow1G8150 Salvia bowleyana HOM05D006928 ORTHO05D008618 3.7e-21 104.8 72 69.4
Zm00001eb146740 Zea mays HOM05D006928 ORTHO05D008618 1.9e-20 102.4 91 60.4
CARHR203570 Cardamine hirsuta HOM05D006928 ORTHO05D008618 4.1e-20 101.3 64 73.4
C09p09990 Brassica napus HOM05D006928 ORTHO05D008618 2.1e-19 99.0 90 58.9
CBR_g19927 Chara braunii HOM05D006928 ORTHO05D008618 7.8e-19 97.1 76 64.5
BcaB08g37178 Brassica carinata HOM05D006928 ORTHO05D008618 7.3e-17 90.5 85 56.5
Os01g0866600 Oryza sativa ssp. japonica HOM05D006928 ORTHO05D008618 4.0e-15 84.7 72 63.9
Cre03.g164550 Chlamydomonas reinhardtii HOM05D006928 ORTHO05D008618 6.8e-15 84.0 74 55.4
SEGI_33222 Sequoiadendron giganteum HOM05D006928 ORTHO05D008618 2.0e-14 82.4 105 46.7
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 1.5e-06 56.2 90 36.7
Atru.chr2.3884 Acer truncatum HOM05D002854 ORTHO05D003051 4.4e-06 54.7 90 41.1
Haze_09882 Corylus avellana HOM05D002854 ORTHO05D003051 4.4e-06 54.7 85 40.0
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 4.4e-06 54.7 90 41.1
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 4.4e-06 54.7 90 41.1
Cfa021906 Carpinus fangiana HOM05D002854 ORTHO05D003051 5.8e-06 54.3 90 41.1
Sopen02g026450 Solanum pennellii HOM05D002854 ORTHO05D003051 5.8e-06 54.3 90 41.1
Atru.chr5.1372 Acer truncatum HOM05D002854 ORTHO05D003051 7.6e-06 53.9 90 41.1
Cc05_g15440 Coffea canephora HOM05D002854 ORTHO05D003051 7.6e-06 53.9 85 38.8
Hma1.2p1_2203F.1_g317080 Hydrangea macrophylla HOM05D002854 ORTHO05D003051 7.6e-06 53.9 84 39.3
Solyc12g015910.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 9.9e-06 53.5 90 40.0


User provided reference genes

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