Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 1.3e-281 972.6 590 100.0
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 1.3e-276 956.1 590 98.6
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.4e-251 872.8 596 91.9
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 7.7e-205 717.6 606 78.7
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.9e-196 688.7 606 76.1
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 1.1e-195 687.2 622 76.4
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 3.7e-183 645.6 603 74.1
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 8.2e-122 441.8 610 58.4
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 5.5e-118 429.1 605 57.4
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.0e-115 420.6 639 55.4
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 5.7e-115 419.1 524 62.0
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 4.8e-114 416.0 557 59.1
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 4.8e-114 416.0 557 59.1
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 7.0e-113 412.1 562 57.3
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.7e-111 407.5 533 59.3
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 5.0e-111 406.0 486 61.1
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.1e-110 404.8 581 57.3
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 1.9e-110 404.1 589 55.3
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.9e-110 404.1 496 62.5
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 4.2e-110 402.9 653 52.8
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 5.5e-110 402.5 563 56.0
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.6e-109 401.0 469 61.4
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.1e-109 400.6 569 58.0
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 1.4e-108 397.9 538 58.7
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 5.2e-108 396.0 611 53.5
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 6.7e-108 395.6 607 55.2
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 4.8e-106 389.4 596 55.0
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 6.3e-106 389.0 535 57.6
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 1.1e-105 388.3 530 59.1
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.2e-104 384.8 536 57.1
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.2e-104 384.8 506 45.1
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 4.5e-104 382.9 587 54.3
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 5.9e-104 382.5 539 57.3
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.9e-103 380.2 603 52.2
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 6.5e-103 379.0 474 61.2
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.1e-102 378.3 593 54.1
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.5e-102 377.9 596 56.0
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.6e-101 374.4 586 54.1
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.7e-101 373.6 541 56.0
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 6.1e-101 372.5 608 51.8
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.1e-101 372.5 440 47.7
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 2.3e-100 370.5 616 50.8
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 3.0e-100 370.2 498 58.4
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 3.0e-100 370.2 440 47.5
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 4.0e-100 369.8 455 59.8
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 2.0e-99 367.5 591 52.5
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 1.3e-98 364.8 483 61.1
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 6.3e-98 362.5 556 53.8
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.1e-97 361.7 547 50.5
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.1e-97 361.7 497 58.6
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.0e-97 359.0 563 54.0
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 1.6e-96 357.8 609 48.9
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.6e-96 357.8 599 52.8
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 1.6e-96 357.8 469 60.3
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 4.5e-96 356.3 617 50.9
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 5.9e-96 355.9 590 52.9
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 5.0e-95 352.8 344 58.1
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 8.6e-95 352.1 618 51.3
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.5e-94 351.3 464 59.9
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.9e-94 350.9 502 56.6
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 4.2e-94 349.7 658 49.8
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.6e-93 347.8 464 59.7
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.0e-92 345.1 503 57.3
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.2e-91 341.7 514 57.0
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 2.0e-91 340.9 406 48.8
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 5.7e-91 339.3 610 50.5
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 2.8e-90 337.0 589 49.1
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 4.1e-89 333.2 476 58.6
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.3e-87 328.2 475 56.8
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 7.3e-86 322.4 485 55.3
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.4e-84 318.2 547 53.0
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 5.2e-84 316.2 598 50.0
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.7e-82 311.2 597 48.7
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 1.6e-80 304.7 462 40.3
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 1.3e-79 301.6 529 49.9
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 6.6e-79 299.3 602 48.3
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.9e-78 297.7 599 48.1
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 5.6e-78 296.2 470 54.3
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 1.8e-76 291.2 516 49.6
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 2.3e-76 290.8 597 47.2
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.1e-76 290.4 373 44.2
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 5.2e-76 289.7 535 49.2
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.2e-75 288.5 569 43.6
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 2.0e-72 277.7 533 51.0
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 3.5e-72 276.9 570 47.7
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 7.8e-72 275.8 602 47.0
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 5.0e-71 273.1 614 46.3
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 6.6e-71 272.7 595 46.6
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 2.5e-70 270.8 595 46.4
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 2.1e-69 267.7 500 52.8
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 2.2e-66 257.7 576 46.5
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 6.4e-66 256.1 592 45.8
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 1.1e-65 255.4 586 46.1
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 1.1e-65 255.4 586 46.1
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 1.4e-65 255.0 585 46.0
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 1.4e-65 255.0 611 45.2
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.0e-63 248.8 603 44.8
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 1.7e-63 248.1 409 41.3
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 1.7e-63 248.1 580 45.9
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 1.1e-62 245.4 577 45.2
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-62 245.0 493 33.5
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.1e-61 241.1 519 33.3
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 2.4e-60 237.7 411 38.9
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 8.9e-60 235.7 530 47.9
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 3.4e-59 233.8 594 44.8
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 3.9e-55 220.3 512 44.9
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 3.1e-52 210.7 235 48.1
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 3.4e-51 207.2 439 33.7
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 8.4e-50 202.6 310 42.6
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 1.1e-49 202.2 441 44.7
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 1.1e-38 165.6 489 40.9
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 4.0e-36 157.1 165 50.9
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.8e-34 150.6 373 32.2
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-32 145.2 360 30.6
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 7.4e-30 136.3 318 34.6
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.7e-26 125.2 317 31.5
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 4.6e-24 117.1 347 30.5
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 9.7e-22 109.4 299 30.4
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 1.4e-20 105.5 74 68.9
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.1e-20 104.4 68 70.6
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.2e-16 92.4 159 39.0
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.2e-16 92.4 159 39.0
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 6.1e-16 90.1 74 63.5
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 1.8e-15 88.6 64 64.1
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.3e-15 88.2 174 32.8
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 8.8e-15 86.3 110 44.5
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 4.3e-14 84.0 207 31.9
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 9.1e-12 76.3 220 32.3
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 9.1e-12 76.3 220 32.3
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 9.1e-12 76.3 220 32.3
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 5.9e-11 73.6 135 34.1
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 2.9e-10 71.2 106 37.7
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 3.8e-10 70.9 173 28.3
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 6.5e-10 70.1 248 25.8
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 3.2e-09 67.8 66 47.0
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 4.2e-09 67.4 163 30.7
Gorai.013G189200 Gossypium raimondii HOM05D007661 ORTHO05D009671 7.2e-09 66.6 173 27.7
Gorai.013G189900 Gossypium raimondii HOM05D007661 ORTHO05D009671 7.2e-09 66.6 173 27.7
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 7.2e-09 66.6 55 67.3
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 7.2e-09 66.6 79 41.8
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 1.6e-08 65.5 172 30.2
Gohir.A11G054800 Gossypium hirsutum HOM05D007661 ORTHO05D009671 1.6e-08 65.5 173 27.2
Gohir.D13G171600 Gossypium hirsutum HOM05D007661 ORTHO05D009671 2.7e-08 64.7 173 27.2
Gohir.D13G171200 Gossypium hirsutum HOM05D007661 ORTHO05D009671 1.0e-07 62.8 173 26.6
VMungo0251G1276 Vigna mungo HOM05D007661 ORTHO05D009671 2.3e-07 61.6 150 25.3
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 3.9e-07 60.8 248 25.4
QL11p020645 Quercus lobata HOM05D007661 ORTHO05D009671 6.7e-07 60.1 176 25.6
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 4.4e-06 57.4 327 22.6
Phvul.002G208300 Phaseolus vulgaris HOM05D007661 ORTHO05D009671 5.7e-06 57.0 150 24.7
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 7.4e-06 56.6 183 24.6
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 9.7e-06 56.2 207 24.2
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 9.7e-06 56.2 166 22.3


User provided reference genes

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