Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g150115.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.5e-74 282.7 140 100.0
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 5.4e-40 167.9 106 84.0
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.1e-32 143.7 144 50.7
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 1.4e-27 126.7 177 44.1
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 5.3e-27 124.8 177 42.9
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.1e-24 117.1 185 40.5
CAN.G93.14 Capsicum annuum HOM05D009662 ORTHO05D003353 2.1e-23 112.8 82 72.0
Sopen09g012940 Solanum pennellii HOM05D009662 ORTHO05D000034 4.6e-23 111.7 102 62.7
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 1.0e-22 110.5 124 50.8
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 3.0e-22 109.0 124 50.8
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 3.3e-21 105.5 171 39.2
Lj1g0003177 Lotus japonicus HOM05D002954 ORTHO05D003353 4.8e-20 101.7 144 41.7
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 3.4e-18 95.5 99 54.5
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.3e-17 93.6 124 46.0
Lj1g0008605 Lotus japonicus HOM05D002954 ORTHO05D003353 1.7e-17 93.2 137 40.1
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 2.9e-17 92.4 121 47.1
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 1.4e-16 90.1 120 44.2
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 7.1e-16 87.8 96 50.0
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 9.3e-16 87.4 84 56.0
Lalb_Chr22g0361071 Lupinus albus HOM05D002954 ORTHO05D003353 1.6e-15 86.7 114 43.9
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 3.5e-15 85.5 167 35.3
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 1.8e-14 83.2 143 37.1
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 3.0e-14 82.4 174 33.9
Phvul.008G149000 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 5.1e-14 81.6 143 36.4
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 8.7e-14 80.9 174 32.2
arahy.Tifrunner.gnm1.ann1.HMQ64L Arachis hypogaea HOM05D002954 ORTHO05D003353 1.1e-13 80.5 149 36.9
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 1.1e-13 80.5 99 45.5
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-13 79.3 174 31.6
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 4.3e-13 78.6 173 32.4
VMungo1309G2137 Vigna mungo HOM05D000006 ORTHO05D000001 5.7e-13 78.2 80 53.8
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 9.6e-13 77.4 174 32.2
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 1.3e-12 77.0 175 31.4
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.6e-12 76.6 95 41.1
arahy.Tifrunner.gnm1.ann1.35BP8C Arachis hypogaea HOM05D009662 ORTHO05D003353 2.1e-12 76.3 157 36.3
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.8e-12 75.9 172 32.0
Nitab4.5_0002430g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.8e-12 75.9 173 31.8
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.8e-12 75.1 101 37.6
arahy.Tifrunner.gnm1.ann1.FG1AAR Arachis hypogaea HOM05D009662 ORTHO05D003353 6.3e-12 74.7 86 50.0
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.3e-12 74.7 99 40.4
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 6.3e-12 74.7 77 49.4
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 1.4e-11 73.6 149 34.9
arahy.Tifrunner.gnm1.ann1.0IB4TY Arachis hypogaea HOM05D002954 ORTHO05D003353 3.1e-11 72.4 114 41.2
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.1e-11 72.4 84 40.5
Psat2g134520 Pisum sativum HOM05D002954 ORTHO05D003353 5.3e-11 71.6 110 41.8
Peaxi162Scf00624g00076 Petunia axillaris HOM05D002954 ORTHO05D003353 6.9e-11 71.2 149 34.2
arahy.Tifrunner.gnm1.ann1.C14DTV Arachis hypogaea HOM05D009662 ORTHO05D003353 1.5e-10 70.1 122 42.6
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.5e-10 70.1 99 36.4
Nitab4.5_0006167g0030 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.0e-10 69.7 92 44.6
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 4.5e-10 68.6 139 34.5
arahy.Tifrunner.gnm1.ann1.IEL8E2 Arachis hypogaea HOM05D002954 ORTHO05D003353 5.9e-10 68.2 80 46.2
arahy.Tifrunner.gnm1.ann1.2WW1WS Arachis hypogaea HOM05D009662 ORTHO05D003353 7.6e-10 67.8 94 44.7
arahy.Tifrunner.gnm1.ann1.1S2QVS Arachis hypogaea HOM05D009662 ORTHO05D003353 1.3e-09 67.0 86 46.5
arahy.Tifrunner.gnm1.ann1.XG7NYG Arachis hypogaea HOM05D009662 ORTHO05D003353 1.3e-09 67.0 86 46.5
Nitab4.5_0000008g0430 Nicotiana tabacum HOM05D002954 ORTHO05D015034 1.3e-09 67.0 103 37.9
Peaxi162Scf00485g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 1.3e-09 67.0 160 31.2
arahy.Tifrunner.gnm1.ann1.41X87M Arachis hypogaea HOM05D009662 ORTHO05D003353 1.7e-09 66.6 86 46.5
Nitab4.5_0003353g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.2e-09 66.2 81 44.4
Nitab4.5_0003410g0070 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.2e-09 66.2 126 36.5
Nitab4.5_0003879g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.2e-09 66.2 119 34.5
arahy.Tifrunner.gnm1.ann1.VKQ8LP Arachis hypogaea HOM05D009662 ORTHO05D003353 2.9e-09 65.9 76 51.3
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.9e-09 65.9 99 41.4
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 3.8e-09 65.5 174 27.6
arahy.Tifrunner.gnm1.ann1.4EB8G0 Arachis hypogaea HOM05D009662 ORTHO05D003353 5.0e-09 65.1 86 45.3
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 5.0e-09 65.1 103 35.0
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.0e-09 65.1 79 43.0
arahy.Tifrunner.gnm1.ann1.R8QYAJ Arachis hypogaea HOM05D009662 ORTHO05D003353 8.5e-09 64.3 77 45.5
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.5e-09 64.3 155 30.3
Phvul.001G154901 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.4e-08 63.5 57 50.9
arahy.Tifrunner.gnm1.ann1.NBL2GQ Arachis hypogaea HOM05D009662 ORTHO05D003353 1.9e-08 63.2 86 46.5
arahy.Tifrunner.gnm1.ann1.T3L04J Arachis hypogaea HOM05D009662 ORTHO05D003353 1.9e-08 63.2 81 40.7
Sopen01g012120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-08 62.8 108 36.1
arahy.Tifrunner.gnm1.ann1.D1MK81 Arachis hypogaea HOM05D002954 ORTHO05D003353 4.2e-08 62.0 74 45.9
Nitab4.5_0007595g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.2e-08 62.0 210 26.2
Psat0s3286g0120 Pisum sativum HOM05D002954 ORTHO05D003353 4.2e-08 62.0 87 39.1
Psat0s1103g0040 Pisum sativum HOM05D009226 ORTHO05D010767 5.5e-08 61.6 106 34.0
arahy.Tifrunner.gnm1.ann1.27XFTQ Arachis hypogaea HOM05D009662 ORTHO05D003353 7.2e-08 61.2 103 38.8
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 1.2e-07 60.5 81 40.7
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 1.2e-07 60.5 81 40.7
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 1.2e-07 60.5 134 27.6
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 1.2e-07 60.5 134 27.6
VMungo0464G1180 Vigna mungo HOM05D003555 ORTHO05D004542 1.2e-07 60.5 60 48.3
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.6e-07 60.1 73 41.1
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.6e-07 60.1 108 32.4
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 2.7e-07 59.3 146 30.8
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 2.7e-07 59.3 103 34.0
Nitab4.5_0000140g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.6e-07 58.9 73 42.5
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 3.6e-07 58.9 175 29.1
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 6.1e-07 58.2 149 28.2
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 6.1e-07 58.2 80 40.0
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 6.1e-07 58.2 90 34.4
TPR.G34719 Trifolium pratense HOM05D002954 ORTHO05D000385 6.1e-07 58.2 143 30.1
Peaxi162Scf00603g00522 Petunia axillaris HOM05D002954 ORTHO05D003353 7.9e-07 57.8 125 30.4
TPR.G3822 Trifolium pratense HOM05D002954 ORTHO05D003353 7.9e-07 57.8 113 34.5
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 1.0e-06 57.4 105 32.4
Nitab4.5_0007501g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.8e-06 56.6 83 39.8
arahy.Tifrunner.gnm1.ann1.FX9Q6E Arachis hypogaea HOM05D002954 ORTHO05D003353 2.3e-06 56.2 53 56.6
COL.COLO4_06576 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.3e-06 56.2 151 25.2
Peaxi162Scf00006g00207 Petunia axillaris HOM05D002954 ORTHO05D003353 2.3e-06 56.2 115 33.0
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 2.3e-06 56.2 122 29.5
arahy.Tifrunner.gnm1.ann1.JC8RXL Arachis hypogaea HOM05D009662 ORTHO05D003353 3.0e-06 55.8 82 40.2
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 3.0e-06 55.8 109 33.9
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 3.9e-06 55.5 173 25.4
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 3.9e-06 55.5 97 38.1
arahy.Tifrunner.gnm1.ann1.VWW6CB Arachis hypogaea HOM05D002954 ORTHO05D003353 5.1e-06 55.1 45 62.2
Ca_23710_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 5.1e-06 55.1 107 29.9
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 5.1e-06 55.1 151 27.8
COL.COLO4_15867 Corchorus olitorius HOM05D001309 ORTHO05D004434 5.1e-06 55.1 115 27.8
Psat0s1021g0160 Pisum sativum HOM05D002954 ORTHO05D003353 5.1e-06 55.1 87 36.8
Psat0s1021g0200 Pisum sativum HOM05D002954 ORTHO05D003353 5.1e-06 55.1 87 36.8
Psat0s10455g0040 Pisum sativum HOM05D002954 ORTHO05D003353 5.1e-06 55.1 87 36.8
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 5.1e-06 55.1 97 38.1
Psat0s9469g0040 Pisum sativum HOM05D002954 ORTHO05D003353 5.1e-06 55.1 87 36.8
Nitab4.5_0000755g0260 Nicotiana tabacum HOM05D002954 ORTHO05D015034 6.7e-06 54.7 77 36.4
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 8.7e-06 54.3 80 40.0
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 8.7e-06 54.3 83 37.3


User provided reference genes

Program Settings