Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.3e-82 309.7 161 100.0
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.6e-46 189.1 165 69.7
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-43 180.3 114 80.7
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.3e-41 172.2 114 79.8
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.7e-33 144.8 145 58.6
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.7e-33 144.8 169 56.2
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-31 140.2 122 61.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.4e-31 140.2 136 62.5
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.4e-31 139.4 140 60.0
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 3.1e-31 139.0 108 67.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.1e-31 138.7 144 54.2
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 6.9e-31 137.9 139 56.8
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.2e-30 137.1 137 59.1
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.2e-30 137.1 135 54.1
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.6e-30 136.0 138 54.3
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.6e-30 136.0 160 54.4
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.6e-30 136.0 140 54.3
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.4e-30 135.6 125 60.0
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.5e-30 135.2 119 56.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 4.5e-30 135.2 160 51.2
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.5e-30 135.2 156 51.9
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 7.6e-30 134.4 128 61.7
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-29 133.7 119 59.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.7e-29 133.3 138 58.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.7e-29 133.3 137 57.7
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.7e-29 133.3 132 59.1
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.7e-29 133.3 126 57.9
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.2e-29 132.9 131 55.7
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.9e-29 132.5 141 58.9
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 2.9e-29 132.5 106 66.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.9e-29 132.5 154 51.9
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.8e-29 132.1 107 65.4
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.8e-29 132.1 107 65.4
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.8e-29 132.1 107 65.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 5.0e-29 131.7 107 65.4
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.0e-29 131.7 151 54.3
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 6.5e-29 131.3 109 65.1
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.5e-29 131.0 144 52.8
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.5e-29 131.0 144 52.8
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.1e-28 130.6 168 49.4
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.1e-28 130.6 154 51.3
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.1e-28 130.6 167 49.1
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.1e-28 130.6 128 58.6
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.1e-28 130.6 143 54.5
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.5e-28 129.4 109 64.2
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 3.2e-28 129.0 116 61.2
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 4.2e-28 128.6 156 48.1
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 5.5e-28 128.3 144 52.1
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.2e-28 127.9 147 54.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.7e-27 125.9 140 54.3
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.7e-27 125.9 109 62.4
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.6e-27 125.6 167 46.1
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.6e-27 125.6 160 51.9
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.6e-27 125.6 125 56.8
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.6e-27 125.6 134 51.5
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.6e-27 125.2 163 46.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 4.6e-27 125.2 149 47.7
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 4.6e-27 125.2 112 59.8
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 6.1e-27 124.8 140 55.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 6.1e-27 124.8 139 53.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 7.9e-27 124.4 134 56.7
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 7.9e-27 124.4 130 54.6
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.0e-26 124.0 130 53.8
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.8e-26 123.2 102 63.7
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-26 123.2 115 59.1
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.8e-26 123.2 110 58.2
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.8e-26 123.2 119 59.7
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.3e-26 122.9 110 58.2
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 2.3e-26 122.9 129 54.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 3.0e-26 122.5 125 52.8
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 3.9e-26 122.1 122 58.2
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 3.9e-26 122.1 162 45.7
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 5.1e-26 121.7 155 46.5
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 5.1e-26 121.7 139 54.7
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.7e-26 121.3 163 45.4
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 6.7e-26 121.3 127 53.5
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 6.7e-26 121.3 137 52.6
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.9e-25 119.8 143 49.7
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-25 119.4 118 54.2
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.5e-25 119.4 167 47.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 4.3e-25 118.6 130 53.1
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 5.7e-25 118.2 123 52.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 7.4e-25 117.9 158 48.1
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 7.4e-25 117.9 123 52.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 7.4e-25 117.9 162 46.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 9.7e-25 117.5 114 57.0
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 9.7e-25 117.5 142 50.7
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.7e-24 116.7 128 46.1
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.7e-24 116.7 157 46.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.2e-24 116.3 136 49.3
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.7e-24 115.5 114 57.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.7e-24 115.5 117 49.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.7e-24 115.5 130 50.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 4.8e-24 115.2 132 50.8
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 6.3e-24 114.8 139 51.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 6.3e-24 114.8 123 54.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.4e-23 113.6 132 50.0
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 3.1e-23 112.5 105 56.2
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.1e-23 112.1 117 56.4
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 5.3e-23 111.7 151 47.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.1e-23 110.9 108 54.6
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 9.1e-23 110.9 124 55.6
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-22 110.5 73 69.9
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-22 110.2 147 47.6
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.5e-22 110.2 177 43.5
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.0e-22 109.8 125 52.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 4.5e-22 108.6 75 65.3
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 5.9e-22 108.2 135 48.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.9e-22 108.2 73 67.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.0e-21 107.5 163 44.2
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.3e-21 107.1 138 47.1
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.3e-21 107.1 108 53.7
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-21 106.7 101 56.4
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.2e-21 106.3 151 44.4
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.9e-21 105.9 108 54.6
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 5.0e-21 105.1 137 49.6
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 5.0e-21 105.1 150 44.7
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.5e-21 104.8 108 50.9
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.4e-20 103.6 166 40.4
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.4e-20 103.6 151 43.0
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 2.5e-20 102.8 101 50.5
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.5e-20 102.8 127 52.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 4.2e-20 102.1 126 50.0
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 9.4e-20 100.9 109 50.5
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.2e-19 100.5 108 51.9
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.0e-18 97.4 115 47.8
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-18 97.1 137 46.7
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.4e-18 97.1 115 51.3
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.8e-18 96.7 123 47.2
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 8.8e-18 94.4 136 39.7
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.7e-17 90.9 84 54.8
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-16 90.1 158 41.1
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.8e-15 86.7 96 50.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.2e-14 84.0 110 43.6
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.0e-13 80.9 110 42.7
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.3e-13 80.5 110 42.7
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.7e-13 80.1 104 44.2
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.8e-13 79.0 108 39.8
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.9e-12 76.6 138 38.4
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 5.5e-12 75.1 148 37.8
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.6e-11 73.6 140 32.9
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-11 73.2 146 33.6
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 4.7e-11 72.0 109 39.4
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-10 70.1 105 42.9
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.7e-10 68.2 105 37.1
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 8.8e-10 67.8 102 40.2
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 8.8e-10 67.8 104 38.5
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 5.7e-09 65.1 63 50.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.4e-09 64.7 119 34.5
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 7.4e-09 64.7 117 39.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.3e-08 63.9 119 34.5
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.8e-08 62.8 44 63.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.7e-08 62.4 127 33.1
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-07 60.5 38 76.3
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.6e-06 57.0 78 39.7
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.6e-06 56.2 153 28.8
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 3.5e-06 55.8 75 49.3


User provided reference genes

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