Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.5e-37 158.3 81 100.0
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 4.0e-35 151.0 82 97.6
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.2e-23 112.8 92 76.1
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 3.4e-18 94.7 94 64.9
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.3e-14 82.8 76 64.5
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 1.7e-14 82.4 79 58.2
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 3.0e-14 81.6 84 60.7
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 4.3e-13 77.8 81 54.3
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 7.3e-13 77.0 83 51.8
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 6.2e-12 73.9 88 50.0
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.4e-11 72.8 88 50.0
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.4e-11 72.8 97 47.4
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.8e-11 72.4 85 48.2
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 3.1e-11 71.6 82 52.4
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.0e-11 71.2 85 48.2
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 4.0e-11 71.2 87 46.0
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 4.0e-11 71.2 87 46.0
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 5.2e-11 70.9 80 52.5
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 6.8e-11 70.5 90 50.0
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 8.9e-11 70.1 90 48.9
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.2e-10 69.7 97 44.3
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.2e-10 69.7 81 49.4
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.2e-10 69.7 91 53.8
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.5e-10 69.3 86 50.0
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.5e-10 69.3 81 49.4
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.0e-10 68.9 92 44.6
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.4e-10 68.2 87 49.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 3.4e-10 68.2 84 53.6
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 4.4e-10 67.8 90 48.9
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 1.7e-09 65.9 87 50.6
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.7e-09 65.9 91 47.3
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 1.7e-09 65.9 89 46.1
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.2e-09 65.5 86 44.2
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.9e-09 65.1 91 46.2
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.9e-09 64.3 94 44.7
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 6.4e-09 63.9 95 45.3
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 6.4e-09 63.9 94 44.7
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 8.3e-09 63.5 97 43.3
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 8.3e-09 63.5 83 43.4
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 8.3e-09 63.5 94 44.7
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.1e-08 63.2 89 43.8
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.1e-08 63.2 89 43.8
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.1e-08 63.2 96 42.7
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.4e-08 62.8 89 47.2
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.4e-08 62.8 83 47.0
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.4e-08 62.0 92 48.9
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 4.1e-08 61.2 92 46.7
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 7.1e-08 60.5 83 43.4
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.2e-07 59.7 93 43.0
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.2e-07 59.7 77 46.8
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.2e-07 59.7 82 45.1
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 1.6e-07 59.3 87 43.7
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.6e-07 59.3 91 46.2
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 3.5e-07 58.2 86 43.0
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.6e-07 57.8 92 41.3
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 4.6e-07 57.8 92 41.3
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 6.0e-07 57.4 78 43.6
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 6.0e-07 57.4 86 45.3
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 1.0e-06 56.6 74 45.9
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.3e-06 56.2 84 41.7
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.3e-06 56.2 94 44.7
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.3e-06 56.2 89 43.8
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.3e-06 56.2 89 42.7
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.7e-06 55.8 83 41.0
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 1.7e-06 55.8 78 43.6
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.7e-06 55.8 79 45.6
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 1.7e-06 55.8 79 44.3
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 2.3e-06 55.5 78 43.6
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 3.0e-06 55.1 75 45.3
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 3.9e-06 54.7 79 45.6
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 3.9e-06 54.7 89 40.4
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 3.9e-06 54.7 50 52.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 6.6e-06 53.9 78 48.7
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 6.6e-06 53.9 81 45.7
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 6.6e-06 53.9 78 43.6


User provided reference genes

Program Settings