Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 1.0e-148 530.0 257 100.0
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 4.3e-144 514.6 250 99.2
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 3.2e-139 498.4 250 95.6
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 3.4e-133 478.4 250 90.8
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.1e-128 463.4 250 90.0
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 1.5e-128 463.0 245 90.2
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 5.9e-125 451.1 264 85.2
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 2.5e-107 392.5 247 75.3
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 4.2e-107 391.7 245 73.1
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 2.3e-105 386.0 248 75.0
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 1.5e-104 383.3 248 73.4
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 4.4e-104 381.7 255 72.2
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 3.7e-103 378.6 239 73.6
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 1.1e-102 377.1 252 70.6
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 3.1e-102 375.6 246 72.4
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 2.7e-101 372.5 250 70.4
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 4.5e-101 371.7 247 72.1
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 5.9e-101 371.3 251 71.3
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 1.7e-100 369.8 247 71.7
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 1.7e-100 369.8 255 70.2
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 2.3e-100 369.4 239 73.2
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 3.8e-100 368.6 233 73.4
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 3.8e-100 368.6 249 69.9
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 2.5e-99 365.9 252 70.6
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 3.3e-99 365.5 253 68.8
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 4.3e-99 365.2 248 72.2
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 1.2e-98 363.6 247 72.5
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 1.6e-98 363.2 246 70.3
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 2.8e-98 362.5 281 65.8
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 6.1e-98 361.3 245 71.0
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 8.0e-98 360.9 247 67.2
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 1.5e-96 356.7 245 71.0
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 4.4e-96 355.1 250 68.0
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 1.3e-95 353.6 256 69.9
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 6.4e-95 351.3 253 70.0
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 1.8e-94 349.7 251 68.1
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 3.2e-94 349.0 237 70.9
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 5.4e-94 348.2 242 68.2
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 7.0e-94 347.8 245 68.2
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 1.2e-93 347.1 250 68.0
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 1.2e-93 347.1 247 69.2
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 1.2e-93 347.1 245 68.6
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 1.6e-93 346.7 243 68.3
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 2.7e-93 345.9 241 68.0
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 2.7e-93 345.9 253 66.4
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 4.6e-93 345.1 245 67.3
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 4.6e-93 345.1 246 67.9
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 4.6e-93 345.1 255 67.5
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 5.9e-93 344.7 248 66.5
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 7.8e-93 344.4 244 68.9
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 1.3e-92 343.6 245 67.3
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 1.3e-92 343.6 249 67.9
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 3.0e-92 342.4 245 66.5
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 3.0e-92 342.4 246 69.1
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 3.9e-92 342.0 256 66.0
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 8.6e-92 340.9 248 66.1
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 1.5e-91 340.1 251 64.9
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 1.9e-91 339.7 245 65.3
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 4.3e-91 338.6 256 64.8
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 4.3e-91 338.6 250 66.8
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 5.6e-91 338.2 307 57.3
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 7.3e-91 337.8 250 64.8
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 7.3e-91 337.8 249 67.9
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.8e-90 335.9 256 63.3
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 3.6e-90 335.5 243 67.1
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 3.6e-90 335.5 245 65.3
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 3.1e-89 332.4 247 66.4
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 4.0e-89 332.0 245 64.5
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 5.2e-89 331.6 243 66.7
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 1.5e-88 330.1 245 64.1
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 2.0e-88 329.7 245 65.3
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 4.4e-88 328.6 232 66.4
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 9.8e-88 327.4 249 64.3
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 2.2e-87 326.2 262 64.5
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 4.1e-86 322.0 206 73.3
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 1.7e-84 316.6 244 64.3
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 3.3e-83 312.4 268 60.4
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 1.4e-81 307.0 304 53.9
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 3.4e-80 302.4 241 63.1
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 9.8e-80 300.8 194 72.2
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 3.5e-77 292.4 279 54.8
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 5.1e-76 288.5 179 74.9
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 1.1e-75 287.3 253 59.7
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 1.5e-75 287.0 253 55.3
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 1.6e-74 283.5 261 57.9
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 1.6e-74 283.5 273 56.8
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 4.0e-73 278.9 191 70.2
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 5.8e-72 275.0 276 53.3
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 4.9e-71 271.9 191 64.9
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 1.1e-70 270.8 264 54.9
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 6.0e-69 265.0 250 52.8
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 1.5e-67 260.4 213 59.6
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 2.5e-67 259.6 212 60.4
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 9.6e-67 257.7 178 70.2
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 2.6e-64 249.6 283 48.1
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 1.6e-61 240.4 287 49.1
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 4.8e-58 228.8 259 48.6
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 1.2e-53 214.2 134 73.9
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 1.7e-47 193.7 136 68.4
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 1.1e-46 191.0 194 54.1
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 3.7e-42 176.0 116 69.8
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 1.9e-30 137.1 85 75.3
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 4.3e-27 125.9 93 67.7
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 2.0e-24 117.1 89 60.7
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 4.4e-11 72.8 40 77.5
vmacro17831 Vaccinium macrocarpon HOM05D005677 ORTHO05D006966 2.6e-08 63.5 220 29.1
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 3.5e-08 63.2 218 29.8
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 1.0e-07 61.6 218 28.9
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 1.0e-07 61.6 195 28.2
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 1.7e-07 60.8 218 29.4
Haze_15089 Corylus avellana HOM05D005677 ORTHO05D006966 3.8e-07 59.7 206 31.1
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 3.8e-07 59.7 119 28.6
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 5.0e-07 59.3 193 30.1
Thhalv10010630m.g Eutrema salsugineum HOM05D005677 ORTHO05D006966 6.5e-07 58.9 188 28.2
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 8.5e-07 58.5 121 28.9
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 1.1e-06 58.2 155 26.5
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 1.1e-06 58.2 126 29.4
Cfa004307 Carpinus fangiana HOM05D005677 ORTHO05D006966 1.5e-06 57.8 183 30.6
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 1.5e-06 57.8 126 29.4
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 1.9e-06 57.4 133 33.8
CiPaw.01G038100 Carya illinoinensis HOM05D005677 ORTHO05D006966 2.5e-06 57.0 197 26.9
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 2.5e-06 57.0 131 31.3
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 2.5e-06 57.0 202 27.7
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 2.5e-06 57.0 160 31.9
BraA09t39853Z Brassica rapa HOM05D005677 ORTHO05D006966 3.2e-06 56.6 172 30.2
PGR102G2535 Punica granatum HOM05D005677 ORTHO05D006966 3.2e-06 56.6 147 29.9
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 3.2e-06 56.6 123 29.3
AT3G50850 Arabidopsis thaliana HOM05D005677 ORTHO05D006966 4.2e-06 56.2 101 36.6
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 4.2e-06 56.2 107 37.4
Lsat_1_v5_gn_4_152101 Lactuca sativa HOM05D005677 ORTHO05D006966 4.2e-06 56.2 141 33.3
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 7.2e-06 55.5 196 26.5
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 9.4e-06 55.1 119 26.9
EL10Ac6g15562 Beta vulgaris HOM05D005677 ORTHO05D006966 9.4e-06 55.1 172 26.2
BcaC09g50274 Brassica carinata HOM05D005677 ORTHO05D006966 9.4e-06 55.1 146 31.5
BcaC09g50280 Brassica carinata HOM05D005677 ORTHO05D006966 9.4e-06 55.1 146 31.5
C01p27040 Brassica napus HOM05D005677 ORTHO05D006966 9.4e-06 55.1 146 31.5
BolC1t02652H Brassica oleracea HOM05D005677 ORTHO05D006966 9.4e-06 55.1 146 31.5
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 9.4e-06 55.1 131 32.1
Dinv39987 Davidia involucrata HOM05D005677 ORTHO05D006966 9.4e-06 55.1 115 34.8
ECA232G2278 Erigeron canadensis HOM05D005677 ORTHO05D006966 9.4e-06 55.1 139 30.9


User provided reference genes

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