Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.3e-125 453.0 216 100.0
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.3e-125 453.0 216 100.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 1.4e-124 449.5 216 99.1
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.3e-122 443.0 216 97.2
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.8e-120 435.3 216 95.8
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.3e-112 409.8 216 90.3
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 3.1e-111 405.2 216 90.3
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 90.7
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.5e-110 402.9 216 88.9
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 3.4e-110 401.7 216 88.4
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.0e-109 400.2 216 88.4
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.0e-109 400.2 216 89.8
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 3.8e-109 398.3 216 88.4
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 8.5e-109 397.1 216 88.9
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 8.5e-109 397.1 216 88.0
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.1e-108 396.7 217 88.9
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.4e-108 396.4 216 88.0
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.9e-108 396.0 218 86.7
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 2.5e-108 395.6 216 86.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 87.5
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 86.6
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 88.5
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 5.5e-108 394.4 216 86.6
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 5.5e-108 394.4 216 88.4
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 9.4e-108 393.7 216 87.0
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.2e-107 393.3 216 88.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.6e-107 392.9 216 86.1
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.6e-107 392.9 215 87.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.6e-107 392.9 215 87.4
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 2.1e-107 392.5 216 88.0
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.1e-107 392.5 216 87.0
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 2.7e-107 392.1 214 87.9
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 3.6e-107 391.7 216 86.6
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 4.7e-107 391.3 220 87.3
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 4.7e-107 391.3 216 88.0
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 6.1e-107 391.0 216 87.0
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 2.3e-106 389.0 220 85.9
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 3.0e-106 388.7 216 85.2
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 3.9e-106 388.3 216 86.1
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 85.2
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 8.8e-106 387.1 190 95.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.1e-105 386.7 238 80.7
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.5e-105 386.3 216 85.6
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 2.0e-105 386.0 217 83.9
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.0e-105 386.0 200 90.5
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 2.6e-105 385.6 216 86.6
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.6e-105 385.6 221 84.6
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 3.3e-105 385.2 217 83.9
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 4.4e-105 384.8 217 84.8
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 7.4e-105 384.0 232 81.5
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 9.7e-105 383.6 216 84.7
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-104 383.3 216 84.7
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 2.2e-104 382.5 216 84.3
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 4.8e-104 381.3 216 85.2
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 4.8e-104 381.3 216 85.2
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 4.8e-104 381.3 186 95.2
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 6.3e-104 380.9 217 83.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 3.1e-103 378.6 216 84.7
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 5.3e-103 377.9 217 83.4
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 9.1e-103 377.1 216 84.3
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.6e-102 375.6 217 82.9
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 3.5e-102 375.2 217 82.5
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.9
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.7e-101 372.9 212 81.6
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.2e-101 372.5 200 88.0
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 6.5e-101 370.9 216 82.9
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.5e-100 369.8 220 82.3
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.9e-100 369.4 216 81.5
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.9e-100 369.4 204 84.8
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 2.1e-99 365.9 216 82.9
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 3.6e-99 365.2 217 80.2
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 4.7e-99 364.8 217 80.6
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 4.7e-99 364.8 217 80.6
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 6.1e-99 364.4 217 80.6
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 8.0e-99 364.0 217 80.6
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.0e-98 363.6 217 80.2
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.4e-98 363.2 217 79.7
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 3.0e-98 362.1 217 80.2
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 4.0e-98 361.7 217 80.2
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 4.0e-98 361.7 186 90.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 8.8e-98 360.5 219 76.3
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.4e-97 358.2 202 83.7
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.7e-96 356.3 197 87.3
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 4.8e-96 354.8 242 74.0
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 8.2e-96 354.0 216 76.4
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 8.2e-96 354.0 219 74.4
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.8e-95 352.8 178 90.4
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.1e-95 352.1 190 85.8
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.1e-95 352.1 180 90.0
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.1e-95 351.7 196 82.1
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 3.5e-94 348.6 198 83.3
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.9e-93 345.5 217 76.0
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 6.5e-93 344.4 215 76.3
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 6.5e-93 344.4 212 77.4
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.1e-92 343.6 189 85.2
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.2e-92 342.0 206 79.1
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 9.4e-92 340.5 189 86.2
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.4e-90 336.7 190 85.8
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 8.3e-88 327.4 192 78.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.1e-87 327.0 196 74.0
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 9.1e-87 323.9 203 76.8
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.5e-84 316.6 215 67.9
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 2.5e-84 315.8 196 70.4
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 5.7e-81 304.7 196 69.4
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 5.6e-76 288.1 145 91.0
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 2.8e-75 285.8 199 65.3
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.6e-75 285.4 171 81.3
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.6e-75 285.4 171 81.3
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.4e-71 273.5 145 84.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.6e-70 270.0 133 93.2
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.4e-66 256.9 133 89.5
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 4.0e-66 255.4 133 88.7
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.5e-60 236.9 130 81.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 4.7e-59 231.9 121 86.0
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.8e-57 224.9 126 86.5
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 5.4e-55 218.4 143 74.1
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.5e-46 189.1 107 86.9
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-40 170.6 89 88.8
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 8.4e-40 167.9 93 84.9
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 4.2e-31 139.0 83 81.9
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 4.6e-30 135.6 87 79.3
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.4e-26 124.0 210 35.7
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.1e-20 104.4 189 34.9
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 2.7e-14 83.2 40 90.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 6.0e-14 82.0 63 65.1
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.1e-11 73.6 64 57.8
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.9e-07 60.5 39 66.7


User provided reference genes

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