Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 1.2e-38 162.5 73 100.0
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 1.2e-38 162.5 73 100.0
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 3.5e-38 161.0 73 97.3
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 1.9e-36 155.2 73 94.5
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 1.6e-35 152.1 73 87.7
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 2.7e-35 151.4 73 90.4
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 3.6e-35 151.0 73 89.0
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 3.6e-35 151.0 71 88.7
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 6.1e-35 150.2 70 90.0
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 6.1e-35 150.2 73 89.0
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 8.0e-35 149.8 73 86.3
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 1.0e-34 149.4 73 89.0
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 1.0e-34 149.4 73 84.9
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 1.4e-34 149.1 73 86.3
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 1.8e-34 148.7 73 87.7
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 1.8e-34 148.7 73 87.7
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 3.0e-34 147.9 68 92.6
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 3.0e-34 147.9 73 87.7
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 5.2e-34 147.1 72 87.5
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 6.8e-34 146.7 71 85.9
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 6.8e-34 146.7 72 87.5
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 6.8e-34 146.7 72 88.9
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 6.8e-34 146.7 71 88.7
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 8.8e-34 146.4 71 87.3
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 1.2e-33 146.0 72 87.5
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 1.2e-33 146.0 71 84.5
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 1.5e-33 145.6 73 84.9
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 2.6e-33 144.8 73 84.9
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 3.4e-33 144.4 73 86.3
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 3.4e-33 144.4 71 83.1
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 5.7e-33 143.7 67 89.6
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 7.5e-33 143.3 72 86.1
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 1.3e-32 142.5 72 84.7
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.3e-32 142.5 73 83.6
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.7e-32 142.1 73 83.6
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 1.7e-32 142.1 73 84.9
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 2.2e-32 141.7 69 88.4
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 2.2e-32 141.7 68 85.3
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 2.2e-32 141.7 72 83.3
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 2.8e-32 141.4 72 83.3
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 2.8e-32 141.4 71 83.1
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 2.8e-32 141.4 78 79.5
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 4.8e-32 140.6 70 82.9
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 6.3e-32 140.2 72 81.9
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 8.3e-32 139.8 73 82.2
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 8.3e-32 139.8 72 81.9
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 8.3e-32 139.8 73 83.6
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 8.3e-32 139.8 80 78.8
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 1.8e-31 138.7 73 84.9
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 2.4e-31 138.3 66 87.9
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 3.1e-31 137.9 73 79.5
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 3.1e-31 137.9 73 82.2
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 4.1e-31 137.5 66 86.4
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 4.1e-31 137.5 66 86.4
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 4.1e-31 137.5 66 86.4
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 4.1e-31 137.5 66 86.4
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 4.1e-31 137.5 66 86.4
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 4.1e-31 137.5 73 82.2
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 4.1e-31 137.5 66 86.4
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 4.1e-31 137.5 72 80.6
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 7.0e-31 136.7 67 83.6
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 7.0e-31 136.7 73 78.1
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 9.1e-31 136.3 73 80.8
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 9.1e-31 136.3 73 80.8
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 9.1e-31 136.3 73 79.5
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 9.1e-31 136.3 73 78.1
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 1.2e-30 136.0 76 80.3
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 1.2e-30 136.0 66 86.4
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 2.0e-30 135.2 73 82.2
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 2.0e-30 135.2 66 83.3
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 2.7e-30 134.8 72 76.4
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 3.5e-30 134.4 72 76.4
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 1.0e-29 132.9 70 80.0
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 1.0e-29 132.9 72 76.4
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 1.3e-29 132.5 66 81.8
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 8.5e-29 129.8 71 76.1
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 8.5e-29 129.8 72 75.0
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 1.5e-28 129.0 71 74.6
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 1.5e-28 129.0 67 79.1
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 1.9e-28 128.6 66 81.8
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 1.9e-28 128.6 66 80.3
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 4.7e-27 124.0 70 78.6
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 5.2e-26 120.6 54 100.0
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 6.8e-26 120.2 66 75.8
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 6.8e-26 120.2 74 73.0
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 2.0e-25 118.6 58 87.9
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 3.4e-25 117.9 53 98.1
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 7.5e-25 116.7 63 82.5
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 1.4e-23 112.5 54 88.9
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 2.4e-23 111.7 54 87.0
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 3.1e-23 111.3 54 87.0
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 3.1e-23 111.3 54 88.9
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 4.1e-23 110.9 54 85.2
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 5.4e-23 110.5 66 72.7
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 2.0e-22 108.6 53 86.8
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 5.0e-21 104.0 63 63.5
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 3.3e-20 101.3 47 91.5
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 5.7e-17 90.5 74 59.5
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 4.9e-16 87.4 60 51.7
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 3.4e-09 64.7 34 76.5


User provided reference genes

Program Settings