Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 8.9e-133 476.9 227 100.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.5e-127 459.5 224 96.9
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 4.4e-124 448.0 224 94.6
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.1e-95 353.6 219 79.0
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 9.6e-95 350.5 212 79.7
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 2.4e-93 345.9 222 76.6
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.6e-81 306.6 221 67.9
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.3e-80 303.5 221 66.5
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 5.6e-79 298.1 226 64.6
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.7e-78 295.4 226 63.7
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.8e-77 293.1 243 59.7
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 2.5e-74 282.7 223 61.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 3.5e-73 278.9 222 61.3
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.1e-71 273.9 218 60.1
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.9e-71 273.1 216 59.3
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.7e-71 271.6 208 61.5
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 3.4e-68 262.3 222 58.6
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 5.8e-68 261.5 219 56.2
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.8e-68 261.5 202 62.4
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 6.5e-67 258.1 214 56.1
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.6e-65 253.4 227 54.2
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.7e-65 252.7 213 58.7
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.5e-65 252.3 200 61.0
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.6e-65 251.9 216 56.5
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 5.1e-64 248.4 217 53.9
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 5.1e-64 248.4 207 59.4
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.1e-63 247.3 205 58.0
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.5e-63 246.9 226 51.8
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.5e-63 246.1 214 56.1
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.3e-63 245.4 222 57.2
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 7.4e-63 244.6 218 57.3
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.3e-62 243.8 225 52.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.6e-62 243.4 228 53.5
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.6e-62 243.4 203 55.7
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 2.8e-62 242.7 209 55.0
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 3.7e-62 242.3 226 51.3
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 4.8e-62 241.9 209 56.5
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 6.3e-62 241.5 212 55.7
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.1e-61 240.7 222 51.8
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.1e-61 240.7 215 52.6
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.8e-61 240.0 185 61.1
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 4.1e-61 238.8 213 55.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.1e-61 238.8 222 50.9
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 4.1e-61 238.8 218 51.8
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 5.3e-61 238.4 204 53.9
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 5.3e-61 238.4 207 57.5
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 6.9e-61 238.0 228 50.4
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 9.0e-61 237.7 209 57.4
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 9.0e-61 237.7 190 57.9
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.2e-60 237.3 226 52.7
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.2e-60 237.3 215 52.1
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.0e-60 236.5 233 48.9
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.6e-60 236.1 214 52.8
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 5.9e-60 235.0 204 58.8
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.0e-59 234.2 215 52.6
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.0e-59 234.2 204 57.4
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.3e-59 233.8 220 53.2
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.7e-59 233.4 204 57.8
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.7e-59 233.4 223 50.2
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.2e-59 233.0 209 56.9
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.2e-59 233.0 215 53.0
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.9e-59 232.6 204 56.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.8e-59 232.3 228 48.7
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.0e-59 231.9 195 56.4
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 5.0e-59 231.9 216 51.4
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 8.5e-59 231.1 204 58.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.1e-58 230.7 235 49.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.9e-58 229.9 218 50.9
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.9e-58 229.9 204 57.4
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.9e-58 229.9 204 57.8
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.9e-58 229.9 209 55.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.9e-58 229.9 217 53.0
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.2e-58 229.2 204 55.9
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 3.2e-58 229.2 203 52.7
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.2e-58 229.2 211 51.7
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.5e-58 228.4 192 54.7
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 7.2e-58 228.0 204 57.4
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 9.4e-58 227.6 218 50.5
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 9.4e-58 227.6 195 54.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.2e-57 227.3 211 51.7
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.1e-57 226.5 215 49.8
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.7e-57 226.1 204 55.4
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.6e-57 225.7 218 52.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.6e-57 225.7 211 53.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.6e-57 225.3 204 55.4
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 2.3e-56 223.0 224 52.7
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.0e-56 222.6 198 52.5
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 5.1e-56 221.9 193 52.8
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 8.8e-56 221.1 239 47.7
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-55 220.7 225 47.1
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.5e-55 219.5 264 43.9
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 4.3e-55 218.8 223 52.5
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.3e-55 218.8 223 52.5
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 5.7e-55 218.4 213 49.8
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.7e-54 216.9 220 50.9
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-54 216.5 212 53.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 2.8e-54 216.1 205 52.2
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 6.3e-54 214.9 211 47.4
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.4e-53 213.8 214 48.1
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.4e-53 213.0 217 51.2
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.1e-53 212.2 224 48.7
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 5.3e-53 211.8 212 53.3
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.1e-53 211.1 216 48.1
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.2e-52 210.7 207 50.7
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.5e-52 210.3 178 55.6
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.6e-52 209.5 208 50.0
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 3.4e-52 209.1 207 48.8
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.9e-52 208.4 204 48.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.0e-51 207.6 215 51.2
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.3e-51 207.2 209 50.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.7e-51 206.8 212 50.9
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.7e-51 206.8 209 52.2
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.9e-51 206.1 204 44.6
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 3.8e-51 205.7 154 62.3
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.8e-51 205.7 206 50.5
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 5.0e-51 205.3 193 48.7
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 6.5e-51 204.9 214 49.5
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.1e-50 204.1 202 49.0
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.2e-50 202.6 186 55.9
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 7.2e-50 201.4 205 48.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.4e-50 201.1 206 49.5
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.7e-49 198.7 204 50.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.0e-48 197.6 232 44.4
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 3.0e-48 196.1 216 46.3
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.0e-48 196.1 138 66.7
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.1e-48 195.3 215 44.7
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.7e-48 194.9 196 50.5
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 8.8e-48 194.5 263 38.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.5e-47 193.7 232 43.5
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.0e-47 193.4 217 42.9
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 5.7e-47 191.8 217 44.7
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.2e-46 189.9 223 43.9
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 4.8e-46 188.7 205 45.9
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 6.3e-46 188.3 208 47.1
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 8.2e-46 188.0 191 44.0
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.8e-45 186.8 205 48.3
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.4e-45 186.4 147 59.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.1e-45 186.0 208 46.6
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 4.1e-45 185.7 205 48.3
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-43 180.3 204 46.6
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 5.0e-43 178.7 204 46.6
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.5e-43 178.3 190 45.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 8.5e-43 177.9 194 45.4
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.5e-42 176.4 201 46.3
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-42 175.6 204 46.1
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.0e-41 171.4 219 42.9
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.0e-41 171.4 219 42.9
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.5e-39 167.2 192 47.4
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 6.3e-38 161.8 247 37.7
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.1e-37 161.0 213 40.8
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-37 160.2 201 44.8
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 8.0e-33 144.8 187 40.1
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 8.0e-33 144.8 159 48.4
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.2e-32 142.1 172 45.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.8e-31 137.9 136 49.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 9.8e-31 137.9 141 48.2
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.8e-30 135.6 206 39.8
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-29 134.0 205 38.5
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.0e-28 130.2 138 47.1
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.0e-24 116.3 142 42.3
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.8e-22 109.8 142 39.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.1e-21 107.8 142 43.0
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.9e-18 97.1 149 38.3
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.0e-16 91.3 71 57.7
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 9.8e-15 84.7 61 59.0
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 6.4e-14 82.0 73 54.8
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.0e-13 78.6 67 55.2
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.2e-12 77.8 108 38.9
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 5.6e-10 68.9 110 36.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.6e-09 66.2 51 56.9
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 4.0e-08 62.8 110 34.5
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.8e-07 58.9 56 46.4
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 6.4e-06 55.5 53 45.3
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 8.3e-06 55.1 77 36.4


User provided reference genes

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