Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 7.0e-103 377.5 216 100.0
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.3e-96 356.7 218 92.7
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 6.8e-90 334.3 238 83.6
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.3e-60 235.3 282 55.0
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.0e-53 214.2 241 57.3
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.3e-53 213.8 281 52.3
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.8e-48 195.7 257 53.3
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 3.9e-45 185.7 231 54.1
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 1.2e-41 174.1 209 61.2
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 6.4e-40 168.3 256 51.6
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 7.1e-39 164.9 263 45.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.9e-36 156.8 268 41.0
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 6.2e-35 151.8 255 42.7
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.4e-34 150.6 238 44.1
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 9.0e-34 147.9 261 42.5
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.0e-33 146.7 220 50.5
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 3.4e-33 146.0 249 46.2
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 5.8e-33 145.2 238 42.9
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.2e-30 137.5 224 46.0
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.7e-30 136.3 258 43.0
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 3.5e-30 136.0 305 38.0
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 6.0e-30 135.2 308 36.0
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.8e-29 133.7 250 42.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.3e-27 127.5 219 44.7
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.2e-27 125.2 241 44.4
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.2e-27 125.2 216 39.8
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 3.1e-26 122.9 229 44.1
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 5.3e-26 122.1 299 38.5
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 5.3e-26 122.1 255 40.0
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 6.9e-26 121.7 263 37.6
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.2e-25 120.9 238 40.8
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.4e-25 119.4 248 38.3
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 3.4e-25 119.4 223 39.0
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.5e-25 119.0 238 39.5
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 3.8e-24 115.9 267 36.7
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 4.9e-24 115.5 207 48.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 4.9e-24 115.5 216 38.9
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 6.4e-24 115.2 233 38.6
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 6.4e-24 115.2 262 36.3
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 8.4e-24 114.8 221 39.8
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.1e-23 114.4 239 40.6
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.4e-23 113.2 242 39.7
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.6e-22 110.5 256 36.3
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.7e-22 109.8 221 42.5
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 3.5e-22 109.4 301 31.9
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.5e-22 109.4 255 37.3
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.3e-21 106.7 259 37.5
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 2.3e-21 106.7 267 34.5
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.3e-21 106.7 93 65.6
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 6.7e-21 105.1 320 31.2
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 8.7e-21 104.8 225 42.7
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.7e-21 104.8 221 41.2
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 1.5e-20 104.0 253 38.3
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.5e-20 104.0 256 36.7
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.9e-20 103.6 256 37.9
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.5e-20 103.2 297 34.3
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 3.3e-20 102.8 94 58.5
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 3.3e-20 102.8 221 40.7
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 4.3e-20 102.4 254 37.0
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.3e-20 102.4 80 68.8
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.6e-19 100.5 275 34.2
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.1e-19 100.1 249 35.7
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.1e-19 100.1 216 41.7
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 4.8e-19 99.0 263 33.5
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 1.1e-18 97.8 244 38.1
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.4e-18 97.4 230 37.0
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 4.0e-18 95.9 265 34.7
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.3e-18 95.5 94 54.3
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-17 94.4 160 41.2
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.2e-17 94.4 260 34.2
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 4.5e-17 92.4 183 42.1
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 5.8e-17 92.0 254 34.3
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.7e-16 90.5 176 40.9
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 3.8e-16 89.4 191 37.7
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 8.4e-16 88.2 82 61.0
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.9e-15 87.0 245 34.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.9e-15 87.0 242 38.0
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 2.5e-15 86.7 244 37.7
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.2e-15 86.3 73 71.2
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.2e-15 86.3 71 71.8
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 4.2e-15 85.9 236 33.5
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 7.1e-15 85.1 209 38.8
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 9.3e-15 84.7 128 46.9
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.6e-14 84.0 253 35.2
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 2.7e-14 83.2 82 57.3
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.7e-14 83.2 228 32.9
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.5e-14 82.8 230 32.2
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 7.9e-14 81.6 201 35.8
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.3e-13 80.9 224 32.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.3e-13 80.9 237 35.0
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 3.0e-13 79.7 68 61.8
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 3.9e-13 79.3 91 53.8
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 5.1e-13 79.0 273 31.9
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 8.7e-13 78.2 147 39.5
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 8.7e-13 78.2 80 58.8
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.5e-12 77.4 66 62.1
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.5e-12 77.4 66 62.1
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.5e-12 77.4 173 38.7
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.5e-12 77.4 154 42.2
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.9e-12 77.0 93 51.6
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.9e-12 77.0 207 36.7
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 3.3e-12 76.3 142 43.0
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 5.7e-12 75.5 195 33.3
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 7.4e-12 75.1 266 30.1
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 7.4e-12 75.1 153 39.2
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 9.6e-12 74.7 92 53.3
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.3e-11 74.3 93 49.5
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.3e-11 74.3 172 40.1
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 1.6e-11 73.9 125 41.6
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.6e-11 73.9 66 62.1
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.1e-11 73.6 163 36.2
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.1e-11 73.6 163 36.2
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.1e-11 73.6 163 36.2
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.1e-11 73.6 153 37.9
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.1e-11 73.6 90 52.2
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.8e-11 73.2 162 36.4
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.8e-11 73.2 70 62.9
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 4.8e-11 72.4 62 64.5
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 8.2e-11 71.6 61 63.9
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 8.2e-11 71.6 254 31.9
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.8e-10 70.5 159 34.6
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 3.1e-10 69.7 240 31.7
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.3e-10 68.9 222 31.1
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 6.9e-10 68.6 192 36.5
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.5e-09 67.4 61 60.7
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 4.5e-09 65.9 161 38.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 4.5e-09 65.9 81 45.7
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 7.6e-09 65.1 163 33.7
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-08 64.3 81 44.4
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.2e-08 63.5 216 31.9
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 3.8e-08 62.8 213 28.6
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 2.5e-07 60.1 209 32.1
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 4.2e-07 59.3 218 30.3
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 2.1e-06 57.0 236 30.1
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 2.1e-06 57.0 151 35.8
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.1e-06 57.0 221 29.0
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.1e-06 57.0 38 76.3
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 4.6e-06 55.8 158 34.8


User provided reference genes

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