Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.7e-249 865.5 427 100.0
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 5.9e-239 830.5 447 92.2
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.1e-212 742.3 472 79.7
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 4.8e-188 661.4 476 71.8
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 5.8e-186 654.4 469 72.5
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 6.5e-177 624.4 442 69.5
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.5e-175 618.6 442 69.0
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 9.4e-168 594.0 444 66.0
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 2.3e-166 589.3 445 66.1
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 5.1e-166 588.2 442 65.2
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 4.3e-165 585.1 435 67.4
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 2.8e-164 582.4 438 64.6
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 3.4e-162 575.5 436 64.2
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 7.7e-162 574.3 445 64.3
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 6.5e-161 571.2 448 64.3
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.4e-160 570.1 491 60.1
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 2.5e-160 569.3 438 63.7
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.7e-159 565.8 454 62.6
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 3.6e-159 565.5 437 64.5
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.1e-159 564.7 454 62.6
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.8e-158 563.1 437 63.2
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 2.3e-158 562.8 437 63.2
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.1e-158 561.6 471 60.7
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.3e-156 557.0 442 62.9
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 3.7e-156 555.4 413 65.4
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.2e-156 554.3 471 59.9
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 1.4e-155 553.5 567 53.4
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 2.4e-155 552.7 441 61.5
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 9.1e-155 550.8 442 62.2
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.5e-154 550.1 436 63.1
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.3e-153 547.0 445 62.2
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.9e-153 545.8 440 61.4
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.9e-152 543.1 474 57.6
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 1.2e-151 540.4 470 56.8
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 2.1e-151 539.7 438 62.8
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 8.0e-151 537.7 437 62.0
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 1.4e-150 537.0 443 60.9
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 5.2e-150 535.0 435 61.4
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 5.2e-150 535.0 435 62.3
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 6.7e-150 534.6 441 61.7
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 1.5e-149 533.5 442 61.3
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 2.6e-149 532.7 429 60.8
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 5.7e-149 531.6 435 61.8
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 7.4e-149 531.2 435 60.0
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 1.3e-148 530.4 362 71.8
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 3.7e-148 528.9 446 61.2
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 8.2e-148 527.7 434 59.7
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 8.2e-148 527.7 440 59.5
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 9.1e-147 524.2 509 53.6
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.2e-146 523.9 440 58.9
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.6e-146 522.7 437 60.6
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.6e-146 522.7 444 59.5
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.5e-146 522.3 434 59.9
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 3.5e-146 522.3 434 59.9
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 4.5e-146 521.9 441 59.4
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 5.9e-146 521.5 437 58.4
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.0e-145 520.8 387 65.4
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 2.5e-144 516.2 437 58.6
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 2.1e-143 513.1 437 58.6
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.4e-142 510.4 385 63.9
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 4.0e-142 508.8 437 57.9
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 4.0e-142 508.8 420 60.2
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.5e-141 506.9 439 58.3
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 2.6e-141 506.1 437 57.9
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 2.6e-141 506.1 439 57.6
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 2.6e-141 506.1 439 57.6
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 3.3e-141 505.8 550 50.4
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 2.8e-140 502.7 439 58.1
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.7e-140 502.3 384 64.6
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.1e-139 500.7 437 56.1
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 4.1e-139 498.8 380 65.3
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 4.1e-139 498.8 435 58.4
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 5.3e-139 498.4 436 58.3
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.6e-138 496.9 387 62.5
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 5.0e-137 491.9 459 54.9
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 4.7e-135 485.3 433 59.8
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 2.8e-132 476.1 441 54.0
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 5.4e-131 471.9 436 53.2
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 9.8e-125 451.1 430 54.9
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 8.3e-124 448.0 415 57.1
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 7.8e-122 441.4 433 51.5
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 6.6e-121 438.3 373 60.3
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 7.0e-115 418.3 318 65.4
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 1.5e-112 410.6 323 64.4
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 3.6e-111 406.0 389 53.7
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 3.2e-107 392.9 321 62.0
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 3.9e-105 386.0 405 51.4
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 9.5e-104 381.3 426 46.9
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.9e-99 367.1 188 96.3
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 3.2e-99 366.3 432 45.4
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 7.8e-98 361.7 288 60.4
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 7.8e-98 361.7 429 42.4
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.7e-92 344.0 313 57.5
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 6.4e-92 342.0 431 42.2
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.2e-91 338.2 288 57.3
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 9.0e-86 321.6 280 60.0
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 8.4e-84 315.1 259 61.8
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 6.6e-81 305.4 361 45.4
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 3.4e-77 293.1 263 57.8
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 3.7e-55 219.9 297 42.1
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 5.0e-52 209.5 265 45.7
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 7.2e-51 205.7 314 37.9
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 4.3e-48 196.4 150 62.7
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 1.3e-47 194.9 160 62.5
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.7e-44 184.5 132 71.2
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 5.0e-44 183.0 194 49.5
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 5.0e-44 183.0 180 52.2
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 8.8e-41 172.2 141 61.7
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 5.0e-36 156.4 92 76.1
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 3.6e-34 150.2 154 51.3
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.1e-32 145.2 93 74.2
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 1.1e-27 128.6 93 61.3
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.5e-27 128.3 97 63.9
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.6e-24 117.5 147 44.2
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 4.8e-23 113.2 397 26.4
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.7e-20 104.8 127 42.5
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 8.8e-17 92.4 137 34.3
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 4.2e-11 73.6 48 66.7
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 7.2e-11 72.8 55 60.0
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.6e-10 71.6 63 50.8
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 5.7e-08 63.2 69 47.8
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.2e-07 61.2 69 47.8
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 9.2e-06 55.8 64 50.0
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 9.2e-06 55.8 64 50.0


User provided reference genes

Program Settings